PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E03614.1.p

Common Name

EUGRSUZ_E03614, LOC104445486

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 462aa MW: 49709.4 Da PI: 6.5086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E03614.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	351	388	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Eucgr.E03614.1.p 351 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 388 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.69E-6	349	393	No hit	No description
SuperFamily	SSF47459	6.54E-12	349	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-9	353	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MAENFQAGIC GESWWSSLRG MPFAGGASIC LAAANDGGGF GWTAADMAMS NKARSSEHND 60 FSLSDSSMVF ENNHYKAQPR SAVRGCGRSE LVVPDLLGTG FGISLPATPD WNQALLGGGG 120 KFAQSSYGSI LNEEMSSRIQ KDWSPKSYSS CVVEDSSMNG FKQINQEFSS DQSELTSITT 180 SSTTAATCEG FSAEFAVGSG LSGGGLYGFP LIQSLLDEPS DFQPQHQSLL TTAARSVNNF 240 SQTMNSNDQS PPSFAKLSSL LKPSSVNRQP NRLPVSDIAM GPTPMNSLDW TTASPPTIYD 300 KKPSCATPNT KRNCDDAREV NSAVKKSSST EPGFKRPRIE TPSPLPTFKV RKEKLGDRIT 360 ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVHVLSTPYM RNGASIQHQQ GCDKPKDYAS 420 EGPKQDLKSR GLCLVPISST FPVSHETPVD FWTPTFGGSF R*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MAENFQAGIC GESWWSSLRG MPFAGGASIC LAAANDGGGF GWTAADMAMS NKARSSEHND  60
FSLSDSSMVF ENNHYKAQPR SAVRGCGRSE LVVPDLLGTG FGISLPATPD WNQALLGGGG  120
KFAQSSYGSI LNEEMSSRIQ KDWSPKSYSS CVVEDSSMNG FKQINQEFSS DQSELTSITT  180
SSTTAATCEG FSAEFAVGSG LSGGGLYGFP LIQSLLDEPS DFQPQHQSLL TTAARSVNNF  240
SQTMNSNDQS PPSFAKLSSL LKPSSVNRQP NRLPVSDIAM GPTPMNSLDW TTASPPTIYD  300
KKPSCATPNT KRNCDDAREV NSAVKKSSST EPGFKRPRIE TPSPLPTFKV RKEKLGDRIT  360
ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVHVLSTPYM RNGASIQHQQ GCDKPKDYAS  420
EGPKQDLKSR GLCLVPISST FPVSHETPVD FWTPTFGGSF R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E03614.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057695.1	0.0	PREDICTED: transcription factor bHLH112
TrEMBL	A0A059C8U1	0.0	A0A059C8U1_EUCGR; Uncharacterized protein
STRING	XP_010057695.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8062	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E03614.1.p
Entrez Gene	104445486