PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E04246.1.p
Common NameEUGRSUZ_E04246, LOC104447702
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 460aa    MW: 51139.7 Da    PI: 5.8004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E04246.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13244290354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h ++Er RR ++N+++  Lr l+P++     +K + a+i+  A+eYIk+L
  Eucgr.E04246.1.p 244 TKHFAAERDRRTQLNEKYVALRNLIPNP-----TKFDRASIVGDATEYIKEL 290
                       78**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.66E-15239305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-11240295No hitNo description
PROSITE profilePS5088814.748241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-12244296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10244290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MIIDLDTACF DRSAIAVPEG PDVMLHQTRD HPHGYHYHHQ MRENVPADFA DENIFSCNTN  60
NNHMTVEEAI DGDPSNTGNQ PGLLQDMFQQ LVANHAQNQN GITAQNSSNE VPPMPPPDHL  120
GFFHLFHLAR SSSSPPPPSP SSSLLPKPPL SYANPNASPT SSVLYDPLFH LRNLQPQPPL  180
MGELSFPYVG LPNEADRGEI VIDGEGGTTA AMMMMYGEDE GVLEMMEGGN RVKIGKRRGG  240
NKLTKHFAAE RDRRTQLNEK YVALRNLIPN PTKFDRASIV GDATEYIKEL LILVKELNLI  300
LERKRWGRES KCKRRRVAIE EEEEEAEEAV DGESSITAVT PLGDLADWSF NGTLRSSCIQ  360
RKSKVTEVNV RIVNDEVMIK LVQRKKINCL LHVTRVLDEL QLDLHHVSGG HIGEHYSFLL  420
NSKICEGSTV YASTIASKVI DIVDRQYYAA TPPPSSCSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312316KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E04246.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058017.20.0PREDICTED: uncharacterized protein LOC104445790
TrEMBLA0A059CB870.0A0A059CB87_EUCGR; Uncharacterized protein
STRINGXP_010059715.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.19e-65bHLH family protein