PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E04247.1.p
Common NameEUGRSUZ_E04247
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 226aa    MW: 25589.6 Da    PI: 9.9994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E04247.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-132869854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       Er RR++iN +++ L++l+P++     +K + a+i+  A++YIk+L
  Eucgr.E04247.1.p 28 TERDRRSQINVKYDALKKLIPSP-----TKGDRASIVGDAIDYIKEL 69
                      6**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-131885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.6682069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-102675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-102869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-112877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-92973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMADMEGCRV KVKMGKRRRG KVTKPYTTER DRRSQINVKY DALKKLIPSP TKGDRASIVG  60
DAIDYIKELL RTVNELKLLA EKKRWGIERS KRQKVEEEGF DGEISITPNP GNPVDQSFNR  120
TLRSSWLQRK SKVTEVDVRI IEDEVTIKLV QRKKINCLLH VSRVLDELQL DLHHVAGGHI  180
GEHYSFLLNT KICEGSTVYA SAIASKLIEV VDRQYAATPP PCSGY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E04247.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058017.21e-156PREDICTED: uncharacterized protein LOC104445790
SwissprotQ84TK14e-77BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A059CC381e-165A0A059CC38_EUCGR; Uncharacterized protein
STRINGXP_010058017.11e-161(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.13e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]