PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E04371.1.p
Common NameEUGRSUZ_E04371
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 260aa    MW: 28907.8 Da    PI: 7.3462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E04371.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.2e-10151244383
                       EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvF 82 
                       k lt+sd +  +rl + ++ +++h           + ++ ++ +++++d +   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v +
  Eucgr.E04371.1.p 151 KRLTQSDLGHMSRLLIGRDSVKSHflrwvneetarQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVGI 243
                       889***********************999888877444457788999996666778888888*************999***********8766 PP

                       E CS
                B3  83 k 83 
                       +
  Eucgr.E04371.1.p 244 Y 244
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-13149249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-13149250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-16150257No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MELVDSLAPK TATMCDVHSP LSMDSSPSRV SYLEDHEKKK PIGDHLRSKF HSPASMDSLS  60
CLSFLQDQEK SSQEKNGDEG ATGISSAGVV ASREFFLLAP DQNTKEVGHP RQEIVPAQLK  120
RKSTASLANA ESLIEVSTEL TLLFDPYKVK KRLTQSDLGH MSRLLIGRDS VKSHFLRWVN  180
EETARQVESS KGADVIVRDM DTCSEHRLVF VFWASSGSYV LKGGWIKEFV KRRGLAVGDE  240
VGIYWEPIAS KFHFSLLHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E04371.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058716.11e-158PREDICTED: uncharacterized protein LOC104446575
TrEMBLA0A059CAZ00.0A0A059CAZ0_EUCGR; Uncharacterized protein
STRINGXP_010058714.11e-161(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.17e-27B3 family protein