PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E04373.1.p
Common NameEUGRSUZ_E04373
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 285aa    MW: 31714.1 Da    PI: 8.4784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E04373.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.1e-10161255384
                       EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvF 82 
                       k lt+sd +  +rl + ++ +++h           + ++ ++ +++++d +   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v +
  Eucgr.E04373.1.p 161 KRLTQSDLGHMSRLLIGRDSVKSHflrwvneetarQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVGI 253
                       889***********************999888877444457788999996666778888888*************999***********8877 PP

                       EE CS
                B3  83 kl 84 
                       + 
  Eucgr.E04373.1.p 254 YW 255
                       74 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-13159268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-13159271IPR015300DNA-binding pseudobarrel domain
CDDcd100177.74E-16160267No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MCDVLRGDVH SPLSMDSSPS RVSYLKDHEK EKPIGDHLRS EVHSLASIDS SSCLSYLQDQ  60
EKNGDEGATG ISSAGVVASR EFFLLAPDQN TKEVGHPRQE IVPAQLKRKS MASLTNAESL  120
TVEKKAKCKR TQKGKKVASG CDAEEVSTEL TLLFDPYKVK KRLTQSDLGH MSRLLIGRDS  180
VKSHFLRWVN EETARQVESS KGADVIVRDM DTCSEHRLVF VFWASSGSYV LKGGWIKEFV  240
KRRGLAVGDE VGIYWEPIAS KFHFSLLHKS GSMSLDFFVK FSVW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E04373.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058716.11e-159PREDICTED: uncharacterized protein LOC104446575
TrEMBLA0A059CCG10.0A0A059CCG1_EUCGR; Uncharacterized protein
STRINGXP_010058714.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-28B3 family protein