PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00049.1.p
Common NameEUGRSUZ_F00049
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 157aa    MW: 17515.2 Da    PI: 8.8697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-0581103223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        C++Cg+ F+  +  + H  + H
  Eucgr.F00049.1.p  81 ICHKCGEQFKKLDAVEAHHLSkH 103
                       6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028082103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
METNLAPCFV DGVTLTTVRK MTRCSLNLRS WASEAKSAGI TAGVIRLRRL SSGHFIPERL  60
VLEASTWFQA VTVSQGSSVL ICHKCGEQFK KLDAVEAHHL SKHAVTELSD GDSSKRIVEI  120
ICQTSWLKSE HSSCEQIERV LKVHNMQRTL ARFKEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059787.12e-52PREDICTED: uncharacterized protein LOC104447774 isoform X1
RefseqXP_018730882.11e-52PREDICTED: uncharacterized protein LOC104447774 isoform X2
TrEMBLA0A059BJ211e-111A0A059BJ21_EUCGR; Uncharacterized protein
STRINGXP_010059787.16e-52(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.17e-35C2H2 family protein