PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00187.1.p
Common NameEUGRSUZ_F00187
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 438aa    MW: 47180.6 Da    PI: 10.4985
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00187.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31365422359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Eucgr.F00187.1.p 365 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPGMLIVTYEGEHNHS 422
                       99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.1E-17316361IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32351423IPR003657WRKY domain
PROSITE profilePS5081130.228358424IPR003657WRKY domain
SuperFamilySSF1182901.57E-26361423IPR003657WRKY domain
SMARTSM007742.1E-38363423IPR003657WRKY domain
PfamPF031062.5E-26365421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MPRGGKARGQ IYLYVLRPLS SRLLPLLLID PPRARLLLHM CSFSSRSRER GMAVELMMGY  60
GSGGDGGVGF AVKKEETALR EAASAGIQSV ENLIKMLSSS PSSPSGGGVG GGRRAGQDSP  120
SPSSSSSGGP SPAVDIEAAT DAAVNKFRKV ISLLDRARTG HARFRRAPVA DPLPENREAF  180
TPVRPAENPV GSARLQSAEP VSAFKVYCPT PIQRLPPLPH NHHHHHNHNH HHHHHQVQQN  240
PIPVVPKVER KESATPTTIN FSTSPPISAA NSSFLSSLTG ETDSVQRSFS SAGFQMTHHL  300
SQVSSADKPP LSYSLKRKCS SMDDAALKCG SSSGKCHCSK KRKSRLKRVV RVPAVSSKMA  360
DIPPDDFSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPGM LIVTYEGEHN  420
HSQSVADVKA PLVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20351421271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00187.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059897.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX02e-98WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A059BJH60.0A0A059BJH6_EUCGR; Uncharacterized protein
STRINGXP_010059897.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-85WRKY DNA-binding protein 7