PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00336.1.p
Common NameEUGRSUZ_F00336
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 247aa    MW: 27377.6 Da    PI: 9.5404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00336.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.6e-0686105120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C k+F+r  nL+ H+
  Eucgr.F00336.1.p  86 FSCHVCFKTFNRYNNLQMHM 105
                       89*****************9 PP
2zf-C2H210.60.0018170192123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk+   k + ++H +++
  Eucgr.F00336.1.p 170 FACRKCGKPLAVKGDWRTHEKNC 192
                       78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-577108No hitNo description
PROSITE profilePS5015710.05586113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-486105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576676.88E-5155190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGIPFEPLPL LSCLAMALHE NPKGANPNAG PCRGDGEDVT VALQIGLPNY LGGSARSSSE  60
ITSRSAPMER YWIPTQQQIL IGFTHFSCHV CFKTFNRYNN LQMHMWGHGS QYRRGPESLK  120
GTQPRAMLGI PCYCCVEGCR NHIDHPRAKP LKDFRTLQTH YKRKHGSKPF ACRKCGKPLA  180
VKGDWRTHEK NCGKRWLCVC GSDFKHKRSL KDHIKSFGPG HGPFAPDSLD IGVEVSGGSV  240
APFMFV*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00336.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064216.10.0PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-108TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A059BKJ00.0A0A059BKJ0_EUCGR; Uncharacterized protein
STRINGXP_010064216.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]