PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00378.2.p
Common NameEUGRSUZ_F00378, LOC104447992
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31099.7 Da    PI: 5.9465
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00378.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1858111356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++++q+++Le+ Fe ++++  e++++LA++l+L+ rqV +WFqNrRa++k
  Eucgr.F00378.2.p  58 KKRRLSANQVKALEKNFEIENKLEPERKARLAEELSLQPRQVAIWFQNRRARWK 111
                       56689************************************************9 PP
2HD-ZIP_I/II126.98.5e-4157149193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ekkrrls++qvk+LE++Fe e+kLeperK++la+eL lqprqva+WFqnrRAR+ktkqlE+d+ +Lk++yd+lk + ++Le+e+e+L++el+e
  Eucgr.F00378.2.p  57 EKKRRLSANQVKALEKNFEIENKLEPERKARLAEELSLQPRQVAIWFQNRRARWKTKQLERDFGHLKASYDSLKLDFDSLEQEKESLAAELTE 149
                       69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1852115IPR009057Homeodomain-like
PROSITE profilePS5007117.03853113IPR001356Homeobox domain
SMARTSM003892.6E-1656117IPR001356Homeobox domain
PfamPF000461.4E-1558111IPR001356Homeobox domain
CDDcd000861.35E-1558114No hitNo description
Gene3DG3DSA:1.10.10.608.7E-1960118IPR009057Homeodomain-like
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PfamPF021837.8E-17113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKRLSSSDSS DVWISMCSGK EEKVLKKSQG YSIEFQAMLD SLDQEDHSGE EAGLITEKKR  60
RLSANQVKAL EKNFEIENKL EPERKARLAE ELSLQPRQVA IWFQNRRARW KTKQLERDFG  120
HLKASYDSLK LDFDSLEQEK ESLAAELTEL KVKLRRETSE SSNHCAVKHE SPLSESSEDG  180
KPGSCSGSVK EDPNPTPELP PSSAAPPLPL RYGSCSTSPP PPPPPPPPPS SSRGTTAGRG  240
YYHQVRMEEN HPSGFISEES CNFFSVDQPP TLHWYFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288ERKARLA
2105113RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00378.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060054.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6 isoform X3
TrEMBLA0A059BKG00.0A0A059BKG0_EUCGR; Uncharacterized protein
STRINGXP_010060054.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.12e-54homeobox protein 16