PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00433.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 374aa    MW: 40095.1 Da    PI: 4.6485
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00433.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.42.9e-16217253135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Eucgr.F00433.1.p 217 CQHCGVSEnaTPAMRRGPAGPRTLCNACGLMWANKGT 253
                       **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.6E-877112IPR010399Tify domain
PROSITE profilePS5132013.33977112IPR010399Tify domain
PfamPF062002.1E-1080111IPR010399Tify domain
PROSITE profilePS5101712.679145187IPR010402CCT domain
PfamPF062031.2E-14145186IPR010402CCT domain
SMARTSM004013.0E-9211264IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.932211270IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-11212261No hitNo description
Gene3DG3DSA:3.30.50.109.0E-15215258IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.11E-16216260No hitNo description
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
PfamPF003204.2E-14217253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MASADPEHLQ ARGPTRAEDD DDDDELENGG GGGGGTDDFA DEVEEAGRGY VDSVGDYEHR  60
RRRGSSAGVG AGGGGVAPSR TSELTLSFEG EVYVFPDVSH EKVQAVLLLL GGRDIPTAVP  120
TFEVPYAQST MDVVDMSKRS NLSRRIASLV RFREKRKERC FDKKIRYTVR KEVAQRMHRK  180
NGQFASIKEG SGAGSLDLAQ SCHQDGTPPP ETVARRCQHC GVSENATPAM RRGPAGPRTL  240
CNACGLMWAN KGTLRDLSKG GRNLSLDQTE LGTPDVKPLI IDGQHFSSNK DDLSMQGISG  300
ETSTSDIKRL SDPSINPGGE VDNQMDFHGT AADLTSTLPM DIMHSSADDD EQGTLVELAN  360
PSDTDIDIPA NFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00433.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060110.10.0PREDICTED: GATA transcription factor 18 isoform X3
SwissprotQ5Z4U58e-62GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A059BLS00.0A0A059BLS0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010060108.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-64ZIM-like 1