PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00497.1.p
Common NameEUGRSUZ_F00497, LOC104448081
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 362aa    MW: 39397.7 Da    PI: 5.8268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00497.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20169218255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Eucgr.F00497.1.p 169 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 218
                       59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.66E-33168228No hitNo description
PROSITE profilePS5103223.103169226IPR001471AP2/ERF domain
SMARTSM003806.2E-37169232IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-23169227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-32169227IPR001471AP2/ERF domain
PRINTSPR003673.5E-11170181IPR001471AP2/ERF domain
PfamPF008474.4E-14170218IPR001471AP2/ERF domain
PRINTSPR003673.5E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAAIMDFYNS ITTAALEPES FDTGGNELME ALSPFIKSAS PSNPSFSSPP CNYFSFSTPS  60
SSSSLSQPMS YPDPCSTASV TQLFPDGFSV QQSGPTGFDL YYPTQVVPQM GQIIQPQAHL  120
QDSSSYPSSF YQYHQQQQQQ QHHGGAAGFL GPRAVPMKQA GLAQKPAKLY RGVRQRHWGK  180
WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYRLRGDF ARLNFPHLKH KGSHIQGDFG  240
DYKPLHSSVD AKLQAICQDM AEKPADGKKR RSAPAGGGSS AAAASPRRPE PEPEPVKTEV  300
GVSAATSSSP ESDDASVEES SPLSELTFND FVEPQWESVG VPENFSLQKY PSEIDWAAIY  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21168226160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00497.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060168.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
TrEMBLA0A059BKI80.0A0A059BKI8_EUCGR; Uncharacterized protein
STRINGXP_010060168.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-59related to AP2 4