PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00557.1.p
Common NameEUGRSUZ_F00557
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 509aa    MW: 58678.8 Da    PI: 9.1099
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00557.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.42.2e-131381375
              FAR1  3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75
                      Y +YA   GF vrksk +k+ ++geit++tfvC++eg++ +++++  +++ ++ e r+gC a ++ k e +g+
  Eucgr.F00557.1.p 13 YVAYAIGKGFGVRKSKIRKN-DKGEITRHTFVCNCEGYSINSSDQ--ERKYEKHEVRCGCPAFFRFKVE-NGT 81
                      99**************9999.8888**************999877..8888999**********99988.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-111382IPR004330FAR1 DNA binding domain
PfamPF105511.9E-32149243IPR018289MULE transposase domain
PROSITE profilePS509668.654353391IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MVFASELEAY HKYVAYAIGK GFGVRKSKIR KNDKGEITRH TFVCNCEGYS INSSDQERKY  60
EKHEVRCGCP AFFRFKVENG TYEGVLVDMA KAGIGGTTAY KYLANEAGGS QNLGFILRNC  120
QNFLQYGRLI NLFWRDSLSK FDYDCFGDVM VFDTTYRTNR YSLICAPFVG VNHHRKNTLF  180
GCAFLLDETA NLFIWLFEVF LKSMGNKAPK TIFTEQDHAM AKAIQIVFPN TQHRLCTWHI  240
EKNANKNIPH LYQKPGFKDK YFSRLMYKCK SEDEFETTWR KMQEEWDTEN NSWLQRLYDL  300
RHKWSSAFGR DIFSCGIKSS QRSESTNNVF QQFSKKTSTL IQFVHYYEEQ LKHIKEIENQ  360
DDYSSLSCEC KLFESKGWLC RHALHILNGN ISVSAIPSSY VLKRWTKGAN AFEVMSLGAQ  420
DENTIRIAKK NLKATVAEIA SYNSSVTMTN DASDDDNNEA SLSEMPILDP LRRKGKEPIY  480
GKLKSSSEKK KKNLRNKHPD AIKIKLVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471491RRKGKEPIYGKLKSSSEKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00557.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056981.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A059BKP00.0A0A059BKP0_EUCGR; Uncharacterized protein
STRINGXP_010027018.10.0(Eucalyptus grandis)
STRINGXP_010056981.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-56FAR1-related sequence 5