PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01003.1.p
Common NameEUGRSUZ_F01003, LOC104448358
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 580aa    MW: 64998 Da    PI: 7.3399
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.35.7e-1172105782373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL+ecA+a+s++d+e+ ++l+++  + as +g  +  l +y++e+L ar  + ++++++  +++e +   s++ l+++++++e++P+lkf+
  Eucgr.F01003.1.p 210 RHLLIECAKALSENDTEKFDKLIKKAWNAASIHGGQVWHLGSYMVEGLMARRKSLGTTVFHVPKCEEPQ---SKDWLTYMHVLYEICPYLKFG 299
                       79****************************************************99****999999998...999****************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aI +a   ++r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p     ++   ee+g+ La + e++++p+ef+ l + +
  Eucgr.F01003.1.p 300 YMAANGAIADACRDADRIHIIDFQIAQGTQWVTLLQALAARPGGAPRVRITGIDDPVLRytRRVGSEEVGRMLAVVSEQFKIPVEFRGL-SVS 391
                       *******************************************************99888899999**********************6.778 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                         d++ ++L+++pgEalaVn+ lql+r++desv+++++rd +L++vkslsPkv++++eqe+++n+++Fl rf+e+l+yysa+f+s+++ lpr+
  Eucgr.F01003.1.p 392 SPDVTRDMLDIRPGEALAVNFPLQLYRTPDESVDTNNPRDGLLRMVKSLSPKVITLIEQESNTNTSPFLSRFVETLDYYSAMFESIDMALPRD 484
                       9999***************************************************************************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        +++i   r++l+r+i n++aceg+er+ rhe ++kWr+rl++aGF+++pl+ ++++ + +llr+++++ ++ ee++g+++lgWk+r+L+svS
  Eucgr.F01003.1.p 485 GNDQIDPVRHCLKRDIINIIACEGKERVGRHELFGKWRSRLQMAGFSQYPLNAHVNSVIGTLLRRYSEN-FTAEEKEGAMLLGWKQRSLISVS 576
                       *******************************************************************55.*********************** PP

              GRAS 372 aW 373
                       aW
  Eucgr.F01003.1.p 577 AW 578
                       ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.105183560IPR005202Transcription factor GRAS
PfamPF035142.0E-114210578IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MELHQLFGCG LTDAGLWCSS SHPVVTSISN RSLKALKFDI GSSPCLPFSS QVESEALPPP  60
RDIREQQSSA ENLSISGASR NHTIETNSNL VCSKSDFCVD PLSDRLTSCS DLTSLSGTLN  120
SSPRMKFAAK ELEATFNDVV TSPYVSYWKG SIPLVQGQKP NRWSQECYRL RSIQPQASVA  180
SRHSQFNELE KWHKAIDELL VRSPPEDKTR HLLIECAKAL SENDTEKFDK LIKKAWNAAS  240
IHGGQVWHLG SYMVEGLMAR RKSLGTTVFH VPKCEEPQSK DWLTYMHVLY EICPYLKFGY  300
MAANGAIADA CRDADRIHII DFQIAQGTQW VTLLQALAAR PGGAPRVRIT GIDDPVLRYT  360
RRVGSEEVGR MLAVVSEQFK IPVEFRGLSV SSPDVTRDML DIRPGEALAV NFPLQLYRTP  420
DESVDTNNPR DGLLRMVKSL SPKVITLIEQ ESNTNTSPFL SRFVETLDYY SAMFESIDMA  480
LPRDGNDQID PVRHCLKRDI INIIACEGKE RVGRHELFGK WRSRLQMAGF SQYPLNAHVN  540
SVIGTLLRRY SENFTAEEKE GAMLLGWKQR SLISVSAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-502135798375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060450.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018732215.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A059BLW70.0A0A059BLW7_EUCGR; Uncharacterized protein
STRINGXP_010060450.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-140GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]