PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F01474.3.p

Common Name

EUGRSUZ_F01474

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YC

Protein Properties

Length: 202aa MW: 22957.9 Da PI: 4.8601

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F01474.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.6	1.2e-55	19	123	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fd Eucgr.F01474.3.p 19 QLQMFWAGQmqeIEQTQDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFD 111 89**98877789*************************************************************************** PP NF-YC 91 flvdivprdelk 102 flvdi+prdelk Eucgr.F01474.3.p 112 FLVDIIPRDELK 123 *******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.38E-34	6	113	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.4E-38	32	105	IPR009072	Histone-fold
Pfam	PF00808	1.0E-21	41	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDQTEQTQQQ QQQQQQQQQL QMFWAGQMQE IEQTQDFKNH SLPLARIKKI MKADEDVRMI 60 SAEAPVVFAK ACEMFILELT LRSWIHTEEN KRRTLQKNDI AAAISRTDVF DFLVDIIPRD 120 ELKEEGLGVT KATIPVVGSP ADIPYYYVPP QHPMGHPSTI MGKPADQAAL YAAQQPQPPV 180 SFMPWPHAQS QQTQDDQQTN S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-58	27	119	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	97	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F01474.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010060857.1	1e-123	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_010060858.1	1e-123	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_010060859.1	1e-123	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	6e-82	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A059BPT1	1e-145	A0A059BPT1_EUCGR; Uncharacterized protein
STRING	XP_010060857.1	1e-122	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-81	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Eucgr.F01474.3.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]