PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01539.1.p
Common NameEUGRSUZ_F01539, LOC104448727
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 403aa    MW: 44635.8 Da    PI: 4.8446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01539.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.11.1e-121711810128
               NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                       +deel  +++   ++++ +++ +vi++v+ +++ P++Lp      e+ wyf  + ++         + ++ g+W   g+ +e++  +    g 
  Eucgr.F01539.1.p  17 SDEELF-KFMFLMARADFVPA-NVITDVNPFNCLPETLP-----AENTWYFTNSMEN---------KGAEGGFWIPRGEPREIFG-DAFINGW 92 
                       578887.45544455555556.78***************.....5688998665544.........44689**************.9999*** PP

               NAM 103 kktLvfykgrapkgektdWvmheyrl 128
                        +t  fy+gr pk ekt+W m ey +
  Eucgr.F01539.1.p  93 EETHEFYEGRGPKVEKTNWSMLEYYM 118
                       ************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.1618141IPR003441NAC domain
SuperFamilySSF1019412.22E-2017141IPR003441NAC domain
PfamPF023659.1E-517117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MCPPAVAPLF DIKNISSDEE LFKFMFLMAR ADFVPANVIT DVNPFNCLPE TLPAENTWYF  60
TNSMENKGAE GGFWIPRGEP REIFGDAFIN GWEETHEFYE GRGPKVEKTN WSMLEYYMTS  120
KVSGEALSAK DAKSLCKVFH SSSSPLSDSK MLQNAVGTEF CRDNYLYSLP PDNFNIPTEQ  180
CVTNQMQVNT TSRNIMRRAS SFSPSHPMES LPELDHIESG DYLELLDLDI QQSPSSRSDN  240
SSCMTMLSDE IFDYLVAMLD SEAESGDHVE HRDAGCNLNV SDSSKPDDLV VQAVISGLPI  300
EERSSQNARD GKPVNRDGSP PLTLASQSRQ LSDSSQTPSA DGRNKTDGRL KKLKRKYLPT  360
SSSQSSDGSN SGRAPSPGPG GRRKTDGAFK KLRKKYLCFM PF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01539.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060912.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1 isoform X1
TrEMBLA0A059BPZ70.0A0A059BPZ7_EUCGR; Uncharacterized protein
STRINGXP_010060912.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.23e-15NAC domain containing protein 80