PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01607.1.p
Common NameEUGRSUZ_F01607
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 232aa    MW: 25094.2 Da    PI: 5.0574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01607.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-183686155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      + ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  +Aa a++aa++kl+g
  Eucgr.F01607.1.p 36 CSYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHDAAVAYDAAARKLYG 86
                      67*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-123686IPR001471AP2/ERF domain
CDDcd000185.67E-213696No hitNo description
SuperFamilySSF541717.85E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-303795IPR001471AP2/ERF domain
SMARTSM003801.7E-3337100IPR001471AP2/ERF domain
PROSITE profilePS5103222.1023794IPR001471AP2/ERF domain
PRINTSPR003672.0E-93849IPR001471AP2/ERF domain
PRINTSPR003672.0E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLKPGVGERK QGRKPAQASS RKGCMRGKGG PENASCSYKG VRQRTWGKWV AEIREPNRGA  60
RLWLGTFDTS HDAAVAYDAA ARKLYGLEAK LNLPELYAAA PTTNLQPPAP APTIANQAVH  120
PLGNQAQIFH NLVLNPPSAP PVPVTQAMPI SNDGLQAQGN DPVDPVPDNL KFGQNIEEND  180
LWGNLNVNLP FLDESIWEEA AMSVDFPVLE DPVNFAGNFL DGNPWESSLP SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-173894663ATERF1
3gcc_A8e-173894663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01607.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064559.11e-170PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLA0A059BNW31e-169A0A059BNW3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010064559.11e-169(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-51ERF family protein