PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F01614.1.p

Common Name

EUGRSUZ_F01614

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 241aa MW: 25564.6 Da PI: 7.7967

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F01614.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215	1.8e-66	13	169	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrel.....kskkqsal 86 g+++CqdCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaakrrerqq+la+a+ + +++ + ++++ +l +++ + + Eucgr.F01614.1.p 13 GGGINCQDCGNQAKKDCVHLRCRTCCKSRGFECPTHVKSTWVPAAKRRERQQHLATAAVMHHHQQqqplR---QEQPFQLdhyfkRQRDGEVA 102 5789***********************************************99987766555522331...22222223333233333344 PP DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + a+s e+ + lP+e++s+avfrc+rvs++dd +ee+aYqtav+igGhvf+GiLydqG+e+ Eucgr.F01614.1.p 103 AAPPFPIATSGLEVG-QALPPEINSSAVFRCLRVSAMDDTDEEFAYQTAVNIGGHVFRGILYDQGPES 169 444555665554444.44**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.6E-64	15	168	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-27	17	59	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.4E-25	120	167	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MMMRHGGEGG GGGGGINCQD CGNQAKKDCV HLRCRTCCKS RGFECPTHVK STWVPAAKRR 60 ERQQHLATAA VMHHHQQQQP LRQEQPFQLD HYFKRQRDGE VAAAPPFPIA TSGLEVGQAL 120 PPEINSSAVF RCLRVSAMDD TDEEFAYQTA VNIGGHVFRG ILYDQGPESR FSSAGESSSG 180 GGGGSHQPLN LITAAPGSTS AAATTAAATG NLATTLLDPS IYATPLNAFM AGTQFFPPPR 240 *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F01614.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061013.1	1e-179	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	1e-72	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A059BQA6	1e-178	A0A059BQA6_EUCGR; Uncharacterized protein
STRING	XP_010061013.1	1e-178	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-62	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Eucgr.F01614.1.p

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]