PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01617.1.p
Common NameEUGRSUZ_F01617, LOC104448803
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 311aa    MW: 33134.1 Da    PI: 6.6828
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01617.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07443538
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       C+ +++ e++ fC+ ++  lC  C    H+       H+
  Eucgr.F01617.1.p  4 LCDVCNKDEASVFCTADEAALCGGCDHRVHHAnklaskHQ 43
                      7******99******************9964446666666 PP
2zf-B_box24.27.1e-085692438
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                      + C+ ++e ++ lfC++++  lC++C l +H    Ht
  Eucgr.F01617.1.p 56 PLCDVCQERRAFLFCQQDRAILCRECDLPIHTAneHT 92
                      78****************************9546665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.964147IPR000315B-box-type zinc finger
PfamPF006432.8E-5343IPR000315B-box-type zinc finger
CDDcd000211.03E-5347No hitNo description
SMARTSM003361.5E-6447IPR000315B-box-type zinc finger
SMARTSM003366.2E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.11153100IPR000315B-box-type zinc finger
CDDcd000218.47E-1156100No hitNo description
PfamPF006437.9E-65692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKILCDVCNK DEASVFCTAD EAALCGGCDH RVHHANKLAS KHQRFSLLCP SPKEFPLCDV  60
CQERRAFLFC QQDRAILCRE CDLPIHTANE HTQKHSRFLL TGVKLSTTSE VYTSAASSAS  120
LSNGCDFVPD FKSEASSSFK KPVSVSAAIS GPRKAAASAA SAAAASAAAA NNKDGNNNGM  180
LASQESGSNG STSSISEYLI EMLPGWHFED FLDSCSASFG FCKKDDGLLP FTDNDNVSSF  240
SSESLGIWVP QAPTPVPCNQ SPYLNGGIIG GFKQTKEPAT TRPGKRWNDD VFAVPEISPS  300
SAGFKRSRPL *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01617.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061016.10.0PREDICTED: B-box zinc finger protein 21
SwissprotQ9LQZ76e-83BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A059BP800.0A0A059BP80_EUCGR; Uncharacterized protein
STRINGXP_010061016.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.13e-78salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]