PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01643.1.p
Common NameEUGRSUZ_F01643
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 507aa    MW: 54376.4 Da    PI: 9.5645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01643.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-05254276223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        C+ Cg++F+  ++L+ H+ + H
  Eucgr.F01643.1.p 254 ACSQCGEVFPKLESLELHQAVrH 276
                       6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808253281IPR007087Zinc finger, C2H2
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
SuperFamilySSF563995.95E-23278502No hitNo description
Gene3DG3DSA:3.90.228.101.2E-12280502IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSNHQLGLQR AHSPSTRPGP ESLWNAQQLH PPPPLLLPSS FLFIFIFHGF LFMALLTFLP  60
DNSASHKQKT PPPSKRKRTK QHHPHDDGKQ HQHQHQHQRE QDPKLKQKQK QKQKQPAPPP  120
SQSSWDQFKN LLTCKQVEGS AVHDPSKNNN KPVGSSCSSI CSFRDVVHGN TRVVHRADNS  180
PESSSVGQEA GLLSRKGGAG SSSSRSLGGS TRSHGGGGGS SRGMQFRKLS GCYECHMIVD  240
PSRYPLTPRS TICACSQCGE VFPKLESLEL HQAVRHAVSE LGPEDSGRHI VEIIFKSSWL  300
KKDNPICKIE RILKVHNTQR TIQRFEDCRD AVKTRALASA RRNPRCAADG NELLRFHCTT  360
LACALGSGGS TSLCGSVPGC GVCTVIRHGF HAKSQGGGGG GGGGGVCTTA SSGRAHDSLR  420
CADGRRAMLV CRVIAGRVRR VAEDGAAPQT GEEDEAAPAA AAAAAAGSYD SVAGHAGVYS  480
NMEELFVSNP KAILPCFVVI YKALES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01643.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061047.10.0PREDICTED: uncharacterized protein LOC104448832
TrEMBLA0A059BQ150.0A0A059BQ15_EUCGR; Uncharacterized protein
STRINGXP_010061047.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-157C2H2-like zinc finger protein