PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01828.1.p
Common NameEUGRSUZ_F01828, LOC104448972
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 1079aa    MW: 119285 Da    PI: 7.3878
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01828.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.88.5e-40144221178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqv++C++dls+ak+yhrrhkvCe hsk++++ v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+qa
  Eucgr.F01828.1.p 144 MCQVDDCDEDLSNAKDYHRRHKVCELHSKSAKAPVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQA 221
                       6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33137206IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.479142219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.24E-36143222IPR004333Transcription factor, SBP-box
PfamPF031101.0E-29145218IPR004333Transcription factor, SBP-box
SuperFamilySSF484034.97E-6818965IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-4824964IPR020683Ankyrin repeat-containing domain
CDDcd002041.81E-6824968No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MEEVGAQVAA PMYVHSALPS RYCEAPPMAK KRDYLYHQYQ PEQMQQQIPQ IQDLRDNWSP  60
SSWNWDNVSF VAKPLESAIL RPGMATAEHK NKERANGLEK NGVGDEADEN LRLNLGGGLK  120
YVEEHVSRAP KRVRSGSPGG NYPMCQVDDC DEDLSNAKDY HRRHKVCELH SKSAKAPVGK  180
QMQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTQ AEDVNSRPLV HGNQESTAPE  240
NLDIVNLLAS LARLQGKTDE RSVNNTLVPD KEHIMKILSK MNSLTLPRDL AARLSTFKNL  300
DGAVMGQTSS KHQDGSNHDM SSPSTMDLLQ VLSATLASSA PNALSALSQG SSQSSDSDRT  360
KMKSPDPSTG AVMQRGIVDL TSVRGERSSS SYQSPVEDSD CQIQETRPNL PLQLFSSSPE  420
DDSPPKLATS GKYYSSDSSN PTEERSPLSS PLMVQKLFPM RTLKEAIEPE KMSTGREING  480
SVELTQNCVH TVPLELFRDS DKGPDCGPYQ SSPYQTGYTS SSGSDHSPSS LTLDSQLDRT  540
GRIMFKLFDK DPSHFPGTLR SQIFNWLSNS PLEMESYIRP GCVVLSVYMS MSSAAWEQLE  600
GNLLERLQSL VQNSDTDFWR SGRFLVHTGK KLASHNGGKL HLCRSWKTCS PELVLVSPLA  660
IVGGQETSLL LRGRNLDNPG TRIHLTYEGG YISKEVTQVS SQGSFNEITV GAFKINAGLP  720
NAFSRCFIEV ENGFKGNSFP VIVADAKICK ELRSLESELE EEPRSRDGSP DKANQDSGCR  780
VSSRAEILHF LNELGWLFQR NTTSSMLRDP DYSLRRYKYL FTFAVERDCC ALVKTLLDIS  840
VSGYLDADGQ SSEPVKALLE IQLLNRAVRR KCRKMVDMLL QYHIITSEGS GSKGSGKTYI  900
FAPNMEGPGS ITPLHVAACT SGSVEIVDAL TNDPQEIGLN GWNSLLDANG QSPYSYAVMR  960
NNHSYNELVS CKLADRKNSQ ISVIIGSEME ELQPSVVQES GQCAQSQLSA GSCTRCAVAA  1020
AKYGRRFPAS RGLLHRPYIH SMLLVAAVCV CVCLFYRNLQ KVGCHAPFNW KDLDYGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-29135218384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01828.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061247.10.0PREDICTED: squamosa promoter-binding-like protein 14
RefseqXP_010061248.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLA0A059BR000.0A0A059BR00_EUCGR; Uncharacterized protein
STRINGXP_010061247.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]