PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01910.1.p
Common NameEUGRSUZ_F01910
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 236aa    MW: 26193.7 Da    PI: 9.8002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-065274123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Eucgr.F01910.1.p 52 FVCEICNKGFQRDQNLQLHRRGH 74
                      89*******************88 PP
2zf-C2H217.98.5e-06130152123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ C+k +  +s+ k H+rt+
  Eucgr.F01910.1.p 130 WKCERCSKKYAVQSDWKAHMRTC 152
                       58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-65174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-85174No hitNo description
PROSITE profilePS5015710.9495274IPR007087Zinc finger, C2H2
SMARTSM003550.0175274IPR015880Zinc finger, C2H2-like
PfamPF121713.1E-55274IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM003558595125IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-6118151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-8125151No hitNo description
SMARTSM0035570130150IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVEMPNPSSQ EVSSSDLSAP PAKKKRSLPG MPDPEAEVIA LSPKTLLATN RFVCEICNKG  60
FQRDQNLQLH RRGHNLPWRL RQRDSNAEPP RKKVYVCPEP GCVHHSPARA LGDLTGIKKH  120
FCRKHGEKKW KCERCSKKYA VQSDWKAHMR TCGTREYKCD CGMLFSRRDS FVTHRAFCDA  180
LAEESSRAQN NNSVQDEQNA RRSGSAAAAA SASSPPPPPL TPSTTVVSPV LSLQSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36126192372Zinc finger protein JACKDAW
5b3h_F3e-36126192372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061336.11e-176PREDICTED: protein indeterminate-domain 1
SwissprotQ9SCQ61e-108IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A059BQ841e-175A0A059BQ84_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010061336.11e-175(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]