PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02157.1.p
Common NameEUGRSUZ_F02157
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 302aa    MW: 32224.9 Da    PI: 6.912
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02157.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16212248135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Eucgr.F02157.1.p 212 CTHCGTSSkcTPMMRRGPSGPRSLCNACGLFWANRGT 248
                       *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.0E-1076111IPR010399Tify domain
PROSITE profilePS5132013.35876111IPR010399Tify domain
PfamPF062005.0E-1279110IPR010399Tify domain
PfamPF062034.5E-16144186IPR010402CCT domain
PROSITE profilePS5101712.65144186IPR010402CCT domain
SuperFamilySSF577168.55E-12205257No hitNo description
SMARTSM004019.4E-16206259IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14210253IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.27E-16212258No hitNo description
PROSITE patternPS003440212239IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.646212265IPR000679Zinc finger, GATA-type
PfamPF003203.4E-14212248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYAHPHHVNL PKPIAGDEDG SGNSGGDSME GSHIRYEPQA LDDGATAGAS MGGMIEDIPP  60
DAVYVPGSGA DMGMAGGEEA SQLTLSFRGQ VYVFDAVTPK KVHAVLLLLG GCELSSGTQS  120
MDLALQNQRV GVVDFPPRCS LPQRAASLNR FRQKRKERCF DKKVRYSVRQ EVALRMQRNK  180
GQFTSSKKSE GESGWGSAQD SGQDEAPQET CCTHCGTSSK CTPMMRRGPS GPRSLCNACG  240
LFWANRGTLR DLSKRTQDHP LTSAEQCEGE VNNSDSGTGI HPNNSLVSFS KADSGALIAE  300
R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02157.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061562.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH67e-90GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A059BQY40.0A0A059BQY4_EUCGR; Uncharacterized protein
STRINGXP_010061562.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-78GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]