PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02157.2.p
Common NameEUGRSUZ_F02157, LOC104449194
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 301aa    MW: 32125.8 Da    PI: 6.912
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02157.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.31.6e-16211247135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Eucgr.F02157.2.p 211 CTHCGTSSkcTPMMRRGPSGPRSLCNACGLFWANRGT 247
                       *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.0E-1076111IPR010399Tify domain
PROSITE profilePS5132013.35876111IPR010399Tify domain
PfamPF062005.0E-1279110IPR010399Tify domain
PROSITE profilePS5101712.65143185IPR010402CCT domain
PfamPF062034.5E-16143185IPR010402CCT domain
SuperFamilySSF577168.55E-12204256No hitNo description
SMARTSM004019.4E-16205258IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14209252IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.646211264IPR000679Zinc finger, GATA-type
PROSITE patternPS003440211238IPR000679Zinc finger, GATA-type
CDDcd002026.99E-16211257No hitNo description
PfamPF003203.4E-14211247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MYAHPHHVNL PKPIAGDEDG SGNSGGDSME GSHIRYEPQA LDDGATAGAS MGGMIEDIPP  60
DAVYVPGSGA DMGMAGGEEA SQLTLSFRGQ VYVFDAVTPK KVHAVLLLLG GCELSSGTQS  120
MDLALQNQRG VVDFPPRCSL PQRAASLNRF RQKRKERCFD KKVRYSVRQE VALRMQRNKG  180
QFTSSKKSEG ESGWGSAQDS GQDEAPQETC CTHCGTSSKC TPMMRRGPSG PRSLCNACGL  240
FWANRGTLRD LSKRTQDHPL TSAEQCEGEV NNSDSGTGIH PNNSLVSFSK ADSGALIAER  300
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02157.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061562.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH69e-89GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A059BRF60.0A0A059BRF6_EUCGR; Uncharacterized protein
STRINGXP_010061562.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-77GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]