PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02220.1.p
Common NameEUGRSUZ_F02220, LOC104449235
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 418aa    MW: 44971.9 Da    PI: 5.648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-10267315355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Eucgr.F02220.1.p 267 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 315
                       58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.29E-11262319No hitNo description
PROSITE profilePS5088815.567264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-16264332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-17265328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7267315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MNNSGGSGGD DMGFPDGGNS AANCPSSGMI ANSISEEVPM MAMSSMSTLE RPPISVDPFF  60
TSGWDTLASL SHNENYGSSS LVSHGNFVGS SYPVLMDNQG FGRNGSTQLA QCLSDPRLQY  120
IGSGSISEMV GGSFGLPELN HLANHGSLPN SASNINSSGC ERNSEKGAQS CECQNSGEEP  180
DGSSAGDRRR KRSPDPSSQY CSNKNNEGDN SDVLRLQNEK KQKIEQPESA DFSKHNTKQS  240
KDDSSNDGEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRMLQEL VPGCNKITGK  300
AVMLDEIINY VQSLQQQVEF LSMKLSTLIP GMSIDLEKAL SKEAHSRGGG ATNLALNPGM  360
GLPHLYAQGV LKGTLPIMPS TDQYRPLSQA SLDGELQALY NMGFDSISGR MKPEQRM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061618.10.0PREDICTED: transcription factor bHLH74
RefseqXP_010061619.10.0PREDICTED: transcription factor bHLH74
SwissprotQ6NKN93e-65BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A059BSH80.0A0A059BSH8_EUCGR; Uncharacterized protein
STRINGXP_010061617.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]