PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02223.2.p
Common NameEUGRSUZ_F02223
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 519aa    MW: 57509 Da    PI: 7.7801
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02223.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36e-16181240155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Eucgr.F02223.2.p 181 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 240
                       78*******************988886678446*************************98 PP
2AP246.11.2e-14285334355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Eucgr.F02223.2.p 285 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 334
                       9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-17181250IPR016177DNA-binding domain
CDDcd000183.63E-22181248No hitNo description
PfamPF008473.7E-12181240IPR001471AP2/ERF domain
PROSITE profilePS5103219.269182248IPR001471AP2/ERF domain
SMARTSM003801.2E-29182254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-16182249IPR001471AP2/ERF domain
PRINTSPR003672.7E-6183194IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17283344IPR016177DNA-binding domain
CDDcd000186.86E-25283344No hitNo description
SMARTSM003807.5E-34284348IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18284342IPR001471AP2/ERF domain
PROSITE profilePS5103219.177284342IPR001471AP2/ERF domain
PfamPF008472.1E-9285334IPR001471AP2/ERF domain
PRINTSPR003672.7E-6324344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MPLSLDSLYS YQQSADPEKQ SLDLLHEPFR HQQQHQIYYP NELTCPALYH SPLAEEEQKE  60
THIASCDENG GFSCLKSWVT RNFSSSSCHV GLDQMSSGMV CHNGGNSSEA VGPMECGDLQ  120
NLSLSMSPSS TSSCVTVPTR QISPTENECV GMEMTKKRSS NCHNKQPVHR KSIDTFGQRT  180
SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQVYLGG YDKEEKAARA YDLAALKYWG  240
PSTHINFPLE NYQKELEEMK NMSRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR  300
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGVNAVTN FDISRYDVER IMASSTLLAG  360
ELARRTKEIA PNEEVAEYNA LTQQKIGSDG TLQLESSGNV TNGSDWKMVL YHSSPQLQAS  420
CMESSVNSSQ PSVDDTAKLG TRHLSNPSSL VTSLSSSREA SPDRAGSAFA NKPPVVSKLV  480
NTSPTSASVT SWLPSPAHMR PSAIAMSHLP VFAAWNDT*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02223.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732061.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-143CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A059BSI20.0A0A059BSI2_EUCGR; Uncharacterized protein
STRINGXP_010061621.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-128AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]