PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02327.1.p
Common NameEUGRSUZ_F02327, LOC104449316
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 366aa    MW: 40710.1 Da    PI: 8.3706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02327.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35271192103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll
  Eucgr.F02327.1.p  27 FLTKTYQLVDDPSTDHIVSWGDDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLL 110
                       9*****************************************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k++
  Eucgr.F02327.1.p 111 CEIHRRKTA 119
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3817111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6023116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.41E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.7E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.7E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAQLMVDKCG EGLLVAVEAQ KAVPAPFLTK TYQLVDDPST DHIVSWGDDD STFVVWRPPE  60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFRKGEKHLL CEIHRRKTAQ  120
PQLTHHHPHS ASPLSGPTPA FFPFPSRLSI SPSDSDDQHS SHWCDSPPPP PPPPLSSPRS  180
GCGGHNNSVG PVASAANYNS SAVTALSEDN ERLRRSNNML MSELAHMKKL YNDIIYFVQN  240
HVKPVAPSTY SWSPPSMVQK PSNQLLGYNN YANAIAAPNN NSCVVTNHVK PVVRSNSNVT  300
QSSLTILEDP PVMNKMKLFG VPLLSKKRLH PEYNSSPVGY METNKARLVL EKDDLGLNLM  360
PPSTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212311917123Heat shock factor protein 1
5d5u_B1e-212311826131Heat shock factor protein 1
5d5v_B1e-212311826131Heat shock factor protein 1
5d5v_D1e-212311826131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02327.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639524e-92AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAK0993544e-92AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence.
GenBankAY3444944e-92AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061734.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-116HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A059BRY30.0A0A059BRY3_EUCGR; Uncharacterized protein
STRINGXP_010061734.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-106heat shock transcription factor B4