PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02358.1.p
Common NameEUGRSUZ_F02358, LOC104449338
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 230aa    MW: 25828.7 Da    PI: 10.1494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02358.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.6e-15131219298
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       +k ++ps+v+   +l l+ +f+++  ++k+ +  +tl de+g+++   +  rk++    l++GWk+F  a++L +gD vvF+l++   ++++v
  Eucgr.F02358.1.p 131 VKSMLPSHVSGGFWLGLSVQFCKSS-LPKNDG-VITLVDEDGEEFPTIYLARKTG----LSGGWKGFSVAHELTDGDAVVFQLIK--PTTMKV 215
                       6899******************766.555444.8***************656665....***********************987..677799 PP

                       EEE- CS
                B3  95 kvfr 98 
                        ++r
  Eucgr.F02358.1.p 216 YIIR 219
                       8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-18122221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-22123222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-24128219No hitNo description
PROSITE profilePS5086310.884130221IPR003340B3 DNA binding domain
SMARTSM010196.4E-21130221IPR003340B3 DNA binding domain
PfamPF023623.7E-13131220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVAAKPKESY EECRRKRLEE NKKRMEALNL PQLSQSLRSS SSSPNSTPMK QSKPRTVEKR  60
VVVVRRSSRV ANMPAPVYRE VVIDRVAVPR RIFKRRDPLN LVYASAEARE YALEKAEQLQ  120
STLEPQYPTL VKSMLPSHVS GGFWLGLSVQ FCKSSLPKND GVITLVDEDG EEFPTIYLAR  180
KTGLSGGWKG FSVAHELTDG DAVVFQLIKP TTMKVYIIRV NGFDKSEEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02358.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061766.11e-169PREDICTED: B3 domain-containing protein At5g42700 isoform X2
SwissprotQ9FMZ49e-74Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A059BSX91e-167A0A059BSX9_EUCGR; Uncharacterized protein
STRINGXP_010061764.11e-147(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-65B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]