PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02474.1.p
Common NameEUGRSUZ_F02474, LOC104449409
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 474aa    MW: 53456.5 Da    PI: 8.7488
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02474.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06442464225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       k  +Cr+f + G C +Gd+CkF H
  Eucgr.F02474.1.p 442 KPQRCRYFEQ-GRCYFGDKCKFLH 464
                       6679**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.303.5E-9103151IPR003034SAP domain
SuperFamilySSF689061.01E-7104151No hitNo description
PfamPF020373.9E-10116150IPR003034SAP domain
PROSITE profilePS508009.347116150IPR003034SAP domain
SMARTSM005130.0018116150IPR003034SAP domain
Gene3DG3DSA:4.10.1000.101.9E-7439468IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-5440466IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826440467IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6441465IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MATSELHAAS TGYQISDTDE EDEACCSDSD SDYDPDDSDD DGDGDRDGGG GVVPDDAHSQ  60
FSELSIKNTA KSRARKDVDR SDDAAQPRLE ASFMEIDEKE DESAETVLSL VHAGQLEKLK  120
VEQCKAYLRK NSLRLTGNKE TLIQRIKEHI EIFTGKGEEK YPVSSFVLRC KGDACTGDVV  180
MFEQNVYELF NIASRSASGP PCGKRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPP  240
LHPLLIKGRN LYRYNTMRQR WEDEGERAKA LMEKHARGSL ARSDREARLQ DKERRKLKKE  300
SRTSRKQNIK KNGAQKISIS TSKTGNEVAQ LRGSSIAGIG QPIVRPIQMS STENHRSRDQ  360
FQEKRGDPQN RGKSLSFMNT TKHELSHSRN DANLGNQRPN HNFSNINGAV QVPHWVHERQ  420
PLAIVNQHPR NFMGGAEQGR RKPQRCRYFE QGRCYFGDKC KFLHEHGERG QRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02474.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061855.10.0PREDICTED: zinc finger CCCH domain-containing protein 62
TrEMBLA0A059BRK20.0A0A059BRK2_EUCGR; Uncharacterized protein
STRINGXP_010061855.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM829434