PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02587.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 465aa    MW: 47191.7 Da    PI: 8.5973
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02587.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.5e-40106202389
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                        +k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+ +tgt++++a+++  ++s +ss+s+   +      
  Eucgr.F02587.1.p 106 IAKRPTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIHATGTGTIPANFStLNVSIRSSGSHRLRPalpspp 198
                       689*****************************************************************9997667777776654444554443 PP

               TCP  89 ...k 89 
                          +
  Eucgr.F02587.1.p 199 rspS 202
                       2220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.039111165IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-35111188IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MESQSNANQS SSNSGSDHHH HHHHHKHKQH DPAPTAPLQL VPLSSSPNSA AEPGHSHGST  60
LHGPSFMGSI SIQPAKPPST PPSSSSSLPP NSASSNPNPT AAIAKIAKRP TKDRHTKVDG  120
RGRRIRMPAV CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIHATGTGT IPANFSTLNV  180
SIRSSGSHRL RPALPSPPRS PSTAASASTT AADAGGFSPG GGGGALGFHH QFYTQVLGSE  240
QASGGSAGGN NGDNPGEGYM TKTFREDLFK DSSHQSSADA GSADLQGGNK SGRPGMQEQE  300
PTSARSSSGV VPAPAMWAVA PATTNGGSTF WMLPVGAGGG GAAVTAPGPG MHEASMWTFP  360
AGAGGAAMQR VNFPGGGRLT PVQLAGSMLV QQPMGLGMTE TTSMGIMGGL GGSGYSSGGS  420
NSGRVNLGMN LEQQHHPHKQ GQAPGGGGGS DGEDDHHRSH HTDS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02587.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2407982e-66AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBankAP0047762e-66AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBankAP0149582e-66AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-66CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010064787.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-49TCP family protein