PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02691.1.p
Common NameEUGRSUZ_F02691, LOC104449589
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 408aa    MW: 42553.1 Da    PI: 10.1286
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02691.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.6e-21161210255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Eucgr.F02691.1.p 161 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 210
                       8********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-33160219IPR001471AP2/ERF domain
CDDcd000183.71E-21161220No hitNo description
SuperFamilySSF541711.37E-22161219IPR016177DNA-binding domain
PROSITE profilePS5103225.686161218IPR001471AP2/ERF domain
PfamPF008472.3E-14161210IPR001471AP2/ERF domain
SMARTSM003801.7E-37161224IPR001471AP2/ERF domain
PRINTSPR003671.1E-11162173IPR001471AP2/ERF domain
PRINTSPR003671.1E-11184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MMAMVSALRQ VVSAGQRGGG GLGEALAPAS VPSSSASSSS PFPTYSPFAS SSPGPSSFGD  60
SGSGSGSGSW VGQKRRREEE SSSSSGHQLL ESIPRSYRVY GDFGGGSSEK AEPSSPIGAE  120
EAKPVVPPPP ATTAATVTAA VPLAPAEPAA AQGESGERRR KYRGVRQRPW GKWAAEIRDP  180
HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEL ARLVQPMPQG VTGLAAAIPR  240
AAAAPLPPPR QPPPPPQGSY PPVQGTDVFR DYWEYSRLLQ GQPSNLLEQM MYTSQLQRSE  300
FPSPSSFSVS FSTPSSSLSS SSLSSSSSIP PPQPQSPFFA PSGPSPSTPF PLLYSGRHQQ  360
PSYPRQPPLP PGNQDQGSSG AGTSVHPPPP RPPPWPGSGQ HPPSTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22160218463ATERF1
3gcc_A2e-22160218463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERRRKY
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02691.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062103.10.0PREDICTED: ethylene-responsive transcription factor ABR1
TrEMBLA0A059BU340.0A0A059BU34_EUCGR; Uncharacterized protein
STRINGXP_010062103.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-21ethylene response factor 110