PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02707.1.p
Common NameEUGRSUZ_F02707
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 532aa    MW: 58928.9 Da    PI: 6.9657
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02707.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix636.9e-201691787
          trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                      m+ ++r+++ k+plW++vs+k+ e g++rs+k+Ckek+en+ k++k++k+g+ ++   +++t+++fdqlea
  Eucgr.F02707.1.p  1 MDGEFRDASVKGPLWDDVSRKLGELGYNRSAKKCKEKFENVYKYHKRTKDGRTGK--HEKKTYRFFDQLEA 69
                      6889*************************************************96..44557*******85 PP
2trihelix107.68.2e-34352437187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k ev aLi++r+++e++++++  k+plWee+s++mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  Eucgr.F02707.1.p 352 RWPKLEVEALIKLRTDLESKYQENGPKGPLWEEISAAMRKAGYNRSAKRCKEKWENINKYFKKVKESNKQR-PEDSKTCPYFHQLDA 437
                       8********************************************************************98.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.93E-15149No hitNo description
PfamPF138373.6E-12570No hitNo description
PROSITE profilePS500905.1341542IPR017877Myb-like domain
PROSITE profilePS500907.561345409IPR017877Myb-like domain
SMARTSM007172.7E-4349411IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-4350408IPR009057Homeodomain-like
CDDcd122031.83E-28351416No hitNo description
PfamPF138371.4E-23351438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDGEFRDASV KGPLWDDVSR KLGELGYNRS AKKCKEKFEN VYKYHKRTKD GRTGKHEKKT  60
YRFFDQLEAL ENQSPSPSVP PPQPPPQMAA AATAAAAAVS TAGPPFTVTS VTTHHHIATS  120
QFSVAPPTGT VPPAGFPSSA GNVAVNLARG SGVASSALPS MPGDLAISDA SVPSSSSTSS  180
DEELGPPTRR GMKRKWRGFF ERLTKEVMDK QEAMHRKFLE MIEKREQERM AREEAWRVQE  240
ITRISREREI LAQERSVVAA KDAAVLSFLQ KIAEQQFPGQ AQADPSPPPL QPQPQPPVRH  300
VPNLSSPQPI SALATTPGEI IRYSQAQSQV VNMEIHRSAN NGDKQAPRSS SRWPKLEVEA  360
LIKLRTDLES KYQENGPKGP LWEEISAAMR KAGYNRSAKR CKEKWENINK YFKKVKESNK  420
QRPEDSKTCP YFHQLDAIYK EKSHKFEALA GQLPKPESSA MAPLMVTPEQ QWPPPPAERR  480
MVDSTAEDMD SDHNPDEEEG DEEEDGNEGD YEVVANKPPS AGANSEDTHD C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188194RRGMKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02707.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062114.10.0PREDICTED: trihelix transcription factor GT-2 isoform X1
TrEMBLA0A059BU620.0A0A059BU62_EUCGR; Uncharacterized protein
STRINGXP_010062114.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-132Trihelix family protein