PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02794.1.p
Common NameEUGRSUZ_F02794
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 247aa    MW: 28066.1 Da    PI: 10.4937
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02794.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-16957145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE....E-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii....fsstgk 45
                      k i+n++ r +tf kR++g++KKA E  +LC+++ +vii    +ss+g 
  Eucgr.F02794.1.p  9 KLISNSRSRRTTFEKRKKGLMKKAGEFKTLCGVDTCVIInpigISSDGL 57
                      569***********************************95555677773 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-16165IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.801147IPR002100Transcription factor, MADS-box
CDDcd002664.09E-18277No hitNo description
SuperFamilySSF554551.44E-19298IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-8323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-161147IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRAKLKLKL ISNSRSRRTT FEKRKKGLMK KAGEFKTLCG VDTCVIINPI GISSDGLVKM  60
ETWPPDRKEV ERIVRRYQSE ATDRRARHAT GLHEFFASRK KKIDAELAKA HRANWEAKYP  120
VSEEIFKDLS DPQLRSLLSA VDDRLEQAKT RLATMKEKRR VEKAAPNSSV GSNHDYSSPL  180
ISLPPEDSTQ FGPSREDYSW CSTVNEAQSM ICDPRSNFYH QIKLKPHSDR KQSTGRAIFL  240
VSQVKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11425RSRRTTFEKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02794.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064825.21e-136PREDICTED: uncharacterized protein LOC104451981
TrEMBLA0A059BT660.0A0A059BT66_EUCGR; Uncharacterized protein
STRINGXP_010064825.11e-156(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-20AGAMOUS-like 82