PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02796.1.p
Common NameEUGRSUZ_F02796, LOC104449675
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 351aa    MW: 38919.4 Da    PI: 7.5385
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02796.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.3e-15276301126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +ktelC+ +++tG C+yGd C+FaHg
  Eucgr.F02796.1.p 276 FKTELCNKWQETGACPYGDHCQFAHG 301
                       79***********************8 PP
2zf-CCCH19.32e-06314339126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ykte Cr  +++  C+yG rC+F H+
  Eucgr.F02796.1.p 314 YKTEVCRMVLAGDMCPYGHRCHFRHS 339
                       9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-18272308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-11273307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.92275303IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-9275302IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-12276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9309345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-12309342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188313341IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5313340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEKDASPQSD PTITTSSTSP EQPPPPPPPH APHSPPPAQS SSSPLNQQFA ANFSALYHSI  60
FPPNSPHSSS ALITPSLCSS ASSDSNQNAT ARSTIAIEHR LNQARLVLEY QQLRDHYDLC  120
RAHLNDLTEE IDSLRRENAR LRLANSELVK LLNLPSQGTL QSCFRRLGLS DTNATGSDFS  180
SEDVCSYSPT SVMDQSGYET SNPERVWLPK SISVRSSGYL KLNQPAASNS RSSRPVSQLR  240
SPRAQEPPKV QQRVYVPGGK KEQEALEFEV YSQGMFKTEL CNKWQETGAC PYGDHCQFAH  300
GIAELRPVIR HPRYKTEVCR MVLAGDMCPY GHRCHFRHSL TEQEMMLASR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-21276342470Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02796.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062213.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_010062214.10.0PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
TrEMBLA0A059BTI70.0A0A059BTI7_EUCGR; Uncharacterized protein
STRINGXP_010062213.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-74C3H family protein