PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F02831.1.p

Common Name

EUGRSUZ_F02831

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 307aa MW: 33780.3 Da PI: 7.1786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F02831.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	221	262	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L++l+P+ + K++ +++LekA+ Y+k Lq Eucgr.F02831.1.p 221 AKNRRERISERLKILQDLVPNgN------KVDLVTMLEKAISYVKFLQ 262 69*****************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-14	211	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	212	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.046	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-11	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-11	218	266	No hit	No description
Pfam	PF00010	1.0E-6	222	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
LSSQGSYGYD EYQKLGFEEE DNLEKTTALM SKNFPPSVCG PSTDALKFRA MNNRPEGVHH 60 QPLINFKSNG GYENFRQASG SLLSFQQSQT VDLKNSDCFG WKDDGIMSNY NYHNLRQIDP 120 KSSSDHPRIV EDVNCYQSTS TYVVHNAVLK HGNSSSNWLY SEATAVADSV QESGAQEAGF 180 HKRAYTGENA QTSKKQCTSA SKSSSKSKSP SSPKDPQSVA AKNRRERISE RLKILQDLVP 240 NGNKVDLVTM LEKAISYVKF LQLQVKVLAT DEFWPAQGGK APDISQVKEA IDAILSSQRD 300 GSSSSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F02831.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062245.1	0.0	PREDICTED: putative transcription factor bHLH086
Swissprot	Q9FJ00	9e-67	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A059BUN5	0.0	A0A059BUN5_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010062245.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	2e-56	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Eucgr.F02831.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]