PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02975.1.p
Common NameEUGRSUZ_F02975
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 180aa    MW: 18811.2 Da    PI: 8.3368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02975.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-201363155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t+e+Aa+a++ a++ ++g
  Eucgr.F02975.1.p 13 SCYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPEMAAAAYDVAALHFRG 63
                      79*****999.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-231372IPR016177DNA-binding domain
PfamPF008471.8E-131363IPR001471AP2/ERF domain
PROSITE profilePS5103223.3541471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-321472IPR001471AP2/ERF domain
SMARTSM003801.5E-351477IPR001471AP2/ERF domain
PRINTSPR003672.7E-101526IPR001471AP2/ERF domain
CDDcd000181.53E-211573No hitNo description
PRINTSPR003672.7E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEDAGSSRGG TSSCYRGVRK RKWGKWVSEI REPGKKTRIW LGSFDTPEMA AAAYDVAALH  60
FRGCNACLNF PAQATGLPRP ESSGADDVRM AAHEAALQRR VGAAPPGSTG GGGKSGALNK  120
AAPVTVSLPP AMIAAINEWP LDSPTMWMQM AEALAAPGPC STASNANARD KELFGDAHAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-171575667ATERF1
3gcc_A5e-171575667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02975.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062394.11e-129PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I25e-48ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A059BU891e-128A0A059BU89_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010062394.11e-128(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.19e-49ERF family protein