PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03093.1.p
Common NameEUGRSUZ_F03093, LOC104449938
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 439aa    MW: 48027.2 Da    PI: 6.8316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.9e-08348389955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR++i +++  L+ l+P        K++ a++L +A  Y+k Lq
  Eucgr.F03093.1.p 348 ARQRREKISERIRVLQMLVPGG-----SKMDTASMLDEAASYLKFLQ 389
                       69******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-11330393No hitNo description
PROSITE profilePS5088814.939339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13345398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5348389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEDFGWPRSV QVADNLTSLW SINQQQNNNG SFNTKSKSNS CGFSGGGNTD HHHHLLVELA  60
GTFKNNSDNI ELQKVKQIAN SSPEIMPHPV APPMMEEPMG VFSNSAVELS PCLVSNFCSM  120
NTFTAAPPIA KNVGVSSELD CFLSGTNHNT IDADTSIEED SIVSNVIFSE SGSFWSNFAN  180
TSSARTAVST GESDHMHHHP SHEANMASGH TSADKAANGT TSFFSKRKNV NFGNMNNPFE  240
PDSHAGGGFK LVSEVPSRPN KRPRSQKQIF TTPTTSSSSK NMNFQQQPSS SGSYSSVDQE  300
PDPEVIAQMK EMIYQAAAFR PVNLGFEAVE KPRRKNVRIS SDPQTVAARQ RREKISERIR  360
VLQMLVPGGS KMDTASMLDE AASYLKFLQS QVKALESFAK DNNNSFAFSS LPFGHSFVPM  420
QSHHHDLQNP FVNPFHPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329335EKPRRKN
2330335KPRRKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03093.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062567.10.0PREDICTED: transcription factor bHLH87
RefseqXP_018731657.10.0PREDICTED: transcription factor bHLH87
TrEMBLA0A059BUM90.0A0A059BUM9_EUCGR; Uncharacterized protein
STRINGXP_010062567.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.19e-63bHLH family protein