PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03175.1.p
Common NameEUGRSUZ_F03175
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 279aa    MW: 31651.5 Da    PI: 5.4566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W+  Ed +l d+++++G g W+++a+  g++R+ k+c++rw +yl
  Eucgr.F03175.1.p 14 RGAWSNNEDRILTDYIALHGEGKWRKVAQNTGLNRCFKSCRLRWVNYL 61
                      89********************************************97 PP
2Myb_DNA-binding49.59.7e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  +++E++l+++++++lG++ W++Ia++++ gRt++++k++w + 
  Eucgr.F03175.1.p  67 RGTISPDEEDLIIRLHRLLGNR-WALIAARLP-GRTDNEIKNYWKTI 111
                       78889*****************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.659961IPR017930Myb domain
SuperFamilySSF466897.11E-2812108IPR009057Homeodomain-like
SMARTSM007171.8E-111363IPR001005SANT/Myb domain
PfamPF002493.7E-131461IPR001005SANT/Myb domain
CDDcd001672.58E-81661No hitNo description
PROSITE profilePS5129424.84162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2365116IPR009057Homeodomain-like
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002495.9E-1567111IPR001005SANT/Myb domain
CDDcd001677.22E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCAKE GVNRGAWSNN EDRILTDYIA LHGEGKWRKV AQNTGLNRCF KSCRLRWVNY  60
LKPGIKRGTI SPDEEDLIIR LHRLLGNRWA LIAARLPGRT DNEIKNYWKT ILVKKLQAAR  120
PHDKHNLNCE EKVFASDGLV LNQQVNSHHK VLGSTEFSTS NELDKDLEKI INTGAKNKDG  180
DDNDMNFLND GDEDFIFGVS DSSLPSDHEK MEMEEEKDLT GVKNGSFPCL EVCASSCSRD  240
EDRIETQMSN NYDSCDQPSL HMELKKLARF LELEDEFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-211211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03175.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018730874.10.0PREDICTED: transcription factor MYB82 isoform X1
TrEMBLA0A059BUM50.0A0A059BUM5_EUCGR; Uncharacterized protein
STRINGXP_010064879.11e-176(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.19e-55myb domain protein 5