PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03384.1.p
Common NameEUGRSUZ_F03384, LOC104450181
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 437aa    MW: 47233 Da    PI: 6.8771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03384.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-063273651154
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  Eucgr.F03384.1.p 327 VRKEKMGDRITALQQLVSPF-----GKTDTASVLTEAIEYIKFL 365
                       5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.627316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11326380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.61E-7326370No hitNo description
Gene3DG3DSA:4.10.280.101.3E-8326374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MADDQFHASG NWWDASRNRY ESGTSSSSSS GLSSLGSFGG WLTDLGGDMK AARSSMESPG  60
GSSVVFHDTQ KLQPHNSAVL GDSGGSLVDP NLHMMNLGLS SQAMDWNNQN LLRGDHKGTE  120
NSFRSMLQEN LNMNASFQST NTGDHGSTVT CQGFHHQIAD SSSSSLYGSP ATFLQGILTG  180
SSENSQQQQQ NVNYPGYNPT SYNAPSSSEL LTSNWSSKVP QFLKISPPKH HQPPPPPPPH  240
HHSQLHFSNN APFWTASATA MNDVRSTTTT TYFPQSQAQF GPPAFDEKPK NLTDVANPGA  300
AMKKSGGEPA GKRPRSETPS PLPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLTEAIE  360
YIKFLHDQIS VLSTPYMKNG GAMQHQQTPD KSEDPDGPRP DLRSRGLCLV PVSSTYPVTH  420
ETTVDFWTPT FGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03384.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062929.10.0PREDICTED: transcription factor bHLH123
SwissprotQ8GXT31e-81BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A059BVS10.0A0A059BVS1_EUCGR; Uncharacterized protein
STRINGXP_010062929.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]