PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03414.2.p
Common NameEUGRSUZ_F03414, LOC104450197
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 439aa    MW: 49551.5 Da    PI: 5.8318
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03414.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.67.9e-130684371373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA+ +s++d+++ ++l+++ +  +s +g+p+qRl ay+ e+L ar  +s+s++y++l+++e +    ++ l+++++++e++P+lkf
  Eucgr.F03414.2.p  68 LKQLLIACAKSLSDNDMHKFEKLIEKARRAVSISGEPIQRLGAYMIEGLVARKEESGSNIYHTLRCREPE---GKDLLSYMHILYEICPYLKF 157
                       689******************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       ++++aN aI ea ++e+r+HiiDf+i qG+QW +LlqaLa+Rp+gpp +RiTg+++p +   +   le+++ rLa + e++++p+efn  + +
  Eucgr.F03414.2.p 158 GYMAANGAIAEACKNEDRIHIIDFQIAQGTQWTTLLQALAARPSGPPYVRITGIDDPVNRyaRGAGLEAVAGRLAVISEKFKIPVEFNG-LPE 249
                       *********************************************************9999999*************************.599 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                          d++ ++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv++++eqe+++n+++Fl+rf+e+l+yy a+f+s++++lpr
  Eucgr.F03414.2.p 250 FAPDVTRDMLDVRPGEALAVNFPLQLHHTPDESVDITNPRDGLLRMVKSLSPKVITLIEQESNTNTTPFLTRFVETLDYYLAMFESIDVTLPR 342
                       999****************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       + +eri+vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e++g ++lgWkdr Lvs+
  Eucgr.F03414.2.p 343 DRKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRNLLRYYS-ENYTLVEKDGGMLLGWKDRFLVSA 434
                       *****************************************************************999.55********************** PP

              GRAS 371 SaW 373
                       SaW
  Eucgr.F03414.2.p 435 SAW 437
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.94542419IPR005202Transcription factor GRAS
PfamPF035142.7E-12768437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDDGQEVRVT DTSIGEHVWD QNPRGSQFSC PEDSVAFIQS QSGKSVHAEK HKEAIEELLV  60
QDVPPGDLKQ LLIACAKSLS DNDMHKFEKL IEKARRAVSI SGEPIQRLGA YMIEGLVARK  120
EESGSNIYHT LRCREPEGKD LLSYMHILYE ICPYLKFGYM AANGAIAEAC KNEDRIHIID  180
FQIAQGTQWT TLLQALAARP SGPPYVRITG IDDPVNRYAR GAGLEAVAGR LAVISEKFKI  240
PVEFNGLPEF APDVTRDMLD VRPGEALAVN FPLQLHHTPD ESVDITNPRD GLLRMVKSLS  300
PKVITLIEQE SNTNTTPFLT RFVETLDYYL AMFESIDVTL PRDRKERINV EQHCLARDIV  360
NIIACEGKER VERHELFGKW KSRLTMAGFR QYPLSSYVNS VIRNLLRYYS ENYTLVEKDG  420
GMLLGWKDRF LVSASAWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-637543726378Protein SCARECROW
5b3h_A4e-637543725377Protein SCARECROW
5b3h_D4e-637543725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03414.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062948.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018732329.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A059BVU60.0A0A059BVU6_EUCGR; Uncharacterized protein
STRINGXP_010062948.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-180GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]