PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03769.1.p
Common NameEUGRSUZ_F03769
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 471aa    MW: 50871.1 Da    PI: 4.8918
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03769.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.67.6e-851034691344
              GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspd....gdpmqRlaayfteALaarlarsvsel....ykal...ppsetseknsseelaa 80 
                       lv+lL+++Aea+ss  ++ ela+ +L rl+el+sp+    g++m+Rlaa+ft AL+  l + +        +++   p + +  +n++++l a
  Eucgr.F03769.1.p 103 LVHLLMAAAEALSSegENRELARVILVRLKELVSPAsggcGTNMERLAAHFTDALQGLLEGAGAVAqgggKHSIggrPHRLEGGYNQTDVLVA 195
                       68**********99767889************9997333346****************9984432211112333121333344455******* PP

              GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfA 169
                       ++l++++sP++kf+h+taNqaIleav +e+rvH++D+di++G+QW++L+qaL s++  +++p+lRiT+v+++ sg  s ++++etg+rLa +A
  Eucgr.F03769.1.p 196 FQLLQDMSPYVKFGHFTANQAILEAVGRERRVHVVDYDIMEGVQWASLMQALVSQDggRPAPHLRITAVSRACSGrrSITTVQETGRRLAAYA 288
                       ********************************************************666688*********99889999************** PP

              GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflea 260
                       +++g pf+f+   ++  e++++ +L++ +gEal  n++l+l +   ++ ++   + ++L+  + lsP++v++ve+ea    +++ F+ rf+++
  Eucgr.F03769.1.p 289 KSVGQPFSFHQYRMDPDETFRPAALKLVQGEALFFNCMLHLPHSTYHTPAS---IASFLSGARALSPTLVTLVEEEAGPagGGGGFMGRFMDS 378
                       ***********9999************************986665443333...336*******************98766889********* PP

              GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaer.......rerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                       l++ysa++dslea++p  + +r+ vE+++lg++i   +    + r       +e   + ++W e+l + GFkp ++s+++ +qakll+  +
  Eucgr.F03769.1.p 379 LHHYSAVYDSLEAGFPMPDWARALVEKVFLGPRIAGSLVRMYRGRpgeeeeeEEGSGKGGSWGEWLVAEGFKPGRVSSSNHCQAKLLVGLF 469
                       **********************************998887655542111000233334578**************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.96377471IPR005202Transcription factor GRAS
PfamPF035142.7E-82103469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDMAIDYVTM MEFSGQSTAT TDEFDGGCRD WSDWSPVLDW DAVPGSGLGG FDDLLASLLE  60
DGTGPDQPHL PPQWVDSPPS VHTVANDKEG DETDGHDFKG LRLVHLLMAA AEALSSEGEN  120
RELARVILVR LKELVSPASG GCGTNMERLA AHFTDALQGL LEGAGAVAQG GGKHSIGGRP  180
HRLEGGYNQT DVLVAFQLLQ DMSPYVKFGH FTANQAILEA VGRERRVHVV DYDIMEGVQW  240
ASLMQALVSQ DGGRPAPHLR ITAVSRACSG RRSITTVQET GRRLAAYAKS VGQPFSFHQY  300
RMDPDETFRP AALKLVQGEA LFFNCMLHLP HSTYHTPASI ASFLSGARAL SPTLVTLVEE  360
EAGPAGGGGG FMGRFMDSLH HYSAVYDSLE AGFPMPDWAR ALVEKVFLGP RIAGSLVRMY  420
RGRPGEEEEE EEGSGKGGSW GEWLVAEGFK PGRVSSSNHC QAKLLVGLFD D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-44884694349Protein SCARECROW
5b3h_A1e-44884693348Protein SCARECROW
5b3h_D1e-44884693348Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03769.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064996.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-172NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A059BXB00.0A0A059BXB0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010064996.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-118GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]