PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F03904.1.p

Common Name

EUGRSUZ_F03904, LOC104450584

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 753aa MW: 86568.3 Da PI: 4.7094

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F03904.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.6e-22	140	224	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+Y+ke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH++ Eucgr.F03904.1.p 140 NYYNTYSKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAS-----SRRKETRTGCLAMIRLRLVDSNRWRVDEVKLEHNHSFD 224 69**************************************98877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-19	140	224	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-24	343	436	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	629	665	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.6E-5	640	667	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MSGDSNLSPN NKAFPPSRNL NISVEQGSPD SEELIEEEAH VLEIDGDEIE NDSEEELELN 60 DGEHELELND GEQDLELNDG EQVLELNGVE QGLEILEEEE EEIVGDGSVG TDVHNGTSDV 120 KEYPPPFVGM EFDTYDDAYN YYNTYSKELG FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK 180 TIKEASSRRK ETRTGCLAMI RLRLVDSNRW RVDEVKLEHN HSFDPLRAKN SKSHKRMDAG 240 AKHKLEPNLD VEVRTIKLYR TPVIDTMGCG SSYSCERETG FDRAKRLKLN KGDAQVMHDF 300 FNQMQLVDPN FLYLMDLGDE GYLKNVFWID SRSRAAYGYF GDVVVFETMN LSNNCEIPLF 360 AYVGVNHHGN NVLLGCALIS DSSLETYIWL FRAWLTCMSG RPPQTIITDQ CQAMQSAIAE 420 VFPRAHHRLS LSYVMQSICE KVTVLQESEA FLTLLNSTVY DIPKVEEFET AWEEIMRRFG 480 IKDQEWLQAL YETRERWAPV YSKDTFFAGQ NGFHRGNSKS LFFDGDVLQQ TSLKEFLLAY 540 ESFLQQKKQK ELLDDLESRD LSAMLKTSSH YELQLSKLYT KAIFTKFQDE VVMMSSCLDV 600 TQVHASGPIV TYSVKERDGD GDLEDVRHFE VIYDKAGTEV RCICSCFNFK GYLCRHALCV 660 LNYNQVEEIP FQYILSRWRK DFKRLYVPEF GSNNIDVSNP VQWFDHLYRK AIRVVEEGMM 720 SQDHYMVAWQ AFKESLNKVR LVADKSNNHF NV*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MSGDSNLSPN NKAFPPSRNL NISVEQGSPD SEELIEEEAH VLEIDGDEIE NDSEEELELN  60
DGEHELELND GEQDLELNDG EQVLELNGVE QGLEILEEEE EEIVGDGSVG TDVHNGTSDV  120
KEYPPPFVGM EFDTYDDAYN YYNTYSKELG FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK  180
TIKEASSRRK ETRTGCLAMI RLRLVDSNRW RVDEVKLEHN HSFDPLRAKN SKSHKRMDAG  240
AKHKLEPNLD VEVRTIKLYR TPVIDTMGCG SSYSCERETG FDRAKRLKLN KGDAQVMHDF  300
FNQMQLVDPN FLYLMDLGDE GYLKNVFWID SRSRAAYGYF GDVVVFETMN LSNNCEIPLF  360
AYVGVNHHGN NVLLGCALIS DSSLETYIWL FRAWLTCMSG RPPQTIITDQ CQAMQSAIAE  420
VFPRAHHRLS LSYVMQSICE KVTVLQESEA FLTLLNSTVY DIPKVEEFET AWEEIMRRFG  480
IKDQEWLQAL YETRERWAPV YSKDTFFAGQ NGFHRGNSKS LFFDGDVLQQ TSLKEFLLAY  540
ESFLQQKKQK ELLDDLESRD LSAMLKTSSH YELQLSKLYT KAIFTKFQDE VVMMSSCLDV  600
TQVHASGPIV TYSVKERDGD GDLEDVRHFE VIYDKAGTEV RCICSCFNFK GYLCRHALCV  660
LNYNQVEEIP FQYILSRWRK DFKRLYVPEF GSNNIDVSNP VQWFDHLYRK AIRVVEEGMM  720
SQDHYMVAWQ AFKESLNKVR LVADKSNNHF NV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F03904.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063490.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Refseq	XP_010063492.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Refseq	XP_010063493.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A059BXP9	0.0	A0A059BXP9_EUCGR; Uncharacterized protein
STRING	XP_010063490.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Eucgr.F03904.1.p
Entrez Gene	104450584

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]