PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03962.1.p
Common NameEUGRSUZ_F03962
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 142aa    MW: 16289.4 Da    PI: 8.0739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03962.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.31e-2551301128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lp G+rF P+de+ +++ L++kv+g+ +   e+i+e+d+y+ ePw++    k+ e+++y F+k + k+   +r +r++ sgyW+   +  +v+
  Eucgr.F03962.1.p   5 LPIGYRFCPSDEQAISYCLAPKVKGEVVFP-EFIHEFDVYEKEPWKFFD--KNAEESLYVFTKLKMKK---SRVERTAGSGYWRGAQS-SDVK 90 
                       699**********************99555.79**************62..3456789****998875...69***********7654.6777 PP

               NAM  94 skkgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                       + +++++glkk L f      + +++++ek +W+mhey++
  Eucgr.F03962.1.p  91 DCHNNVIGLKKHLNFKvkdgsSSNSQNTEKGSWIMHEYSV 130
                       77899***********887665677888999*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-274135IPR003441NAC domain
PROSITE profilePS5100528.2755141IPR003441NAC domain
PfamPF023651.4E-186130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MADTLPIGYR FCPSDEQAIS YCLAPKVKGE VVFPEFIHEF DVYEKEPWKF FDKNAEESLY  60
VFTKLKMKKS RVERTAGSGY WRGAQSSDVK DCHNNVIGLK KHLNFKVKDG SSSNSQNTEK  120
GSWIMHEYSV PNQEVSRIHL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-15413016142NO APICAL MERISTEM PROTEIN
1ut4_B1e-15413016142NO APICAL MERISTEM PROTEIN
1ut7_A1e-15413016142NO APICAL MERISTEM PROTEIN
1ut7_B1e-15413016142NO APICAL MERISTEM PROTEIN
3swm_A1e-15413019145NAC domain-containing protein 19
3swm_B1e-15413019145NAC domain-containing protein 19
3swm_C1e-15413019145NAC domain-containing protein 19
3swm_D1e-15413019145NAC domain-containing protein 19
3swp_A1e-15413019145NAC domain-containing protein 19
3swp_B1e-15413019145NAC domain-containing protein 19
3swp_C1e-15413019145NAC domain-containing protein 19
3swp_D1e-15413019145NAC domain-containing protein 19
4dul_A1e-15413016142NAC domain-containing protein 19
4dul_B1e-15413016142NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03962.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065054.18e-97PREDICTED: NAC domain-containing protein 7
TrEMBLA0A059BX481e-102A0A059BX48_EUCGR; Uncharacterized protein
STRINGXP_010065054.13e-96(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.15e-17NAC domain containing protein 3