PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F03987.1.p
Common NameEUGRSUZ_F03987, LOC104450655
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 350aa    MW: 38139.8 Da    PI: 6.519
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F03987.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.8e-1650109155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  Eucgr.F03987.1.p  50 SIYRGVTRHRWTGRYEAHLWDkHCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 109
                       57***********************55656446*************************98 PP
2AP253.36.9e-17152203155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Eucgr.F03987.1.p 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAEAYDMAAIEYRG 203
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1750119IPR016177DNA-binding domain
PfamPF008473.7E-1250109IPR001471AP2/ERF domain
SMARTSM003801.3E-2651123IPR001471AP2/ERF domain
PROSITE profilePS5103219.54651117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-1651118IPR001471AP2/ERF domain
PRINTSPR003673.9E-65263IPR001471AP2/ERF domain
CDDcd000185.53E-23152213No hitNo description
PfamPF008471.4E-12152203IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-17152213IPR016177DNA-binding domain
PROSITE profilePS5103218.571153211IPR001471AP2/ERF domain
SMARTSM003804.7E-25153217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-18153212IPR001471AP2/ERF domain
PRINTSPR003673.9E-6193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAKTSLPRQG QEEASDPKKD GGGAKSAAAK AKAKRTRKSV PRDAPQQRSS IYRGVTRHRW  60
TGRYEAHLWD KHCWNESQNK KGRQVYLGAY DDEEAAAHAY DLAALKYWGP ETVLNFTLSA  120
YEEELKEMEG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  180
LGTYATQEEA AEAYDMAAIE YRGLNAVTNF DLSRYIKWPQ PGAPDSSAAE LSNSQQSPTA  240
GGGGAAAAVA EVPAAHDPQG GSSASSALSL LLQSSKFKEM LERTSSAEDQ GAGSTTSSES  300
EAPRRSFPDD IQTYFDCHDV SGGLDDDGIF GDLNSFGSPI FHCELDLSS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F03987.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063617.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-122AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A059BX910.0A0A059BX91_EUCGR; Uncharacterized protein
STRINGXP_010063617.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-104ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]