PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F04119.1.p

Common Name

EUGRSUZ_F04119, LOC104450768

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 237aa MW: 27069.7 Da PI: 6.8548

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F04119.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	68	120	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ + ++ Lr+llP ++K ++ A++YI++L+ Eucgr.F04119.1.p 68 QKKMHRDIERQRRQEMSTLYASLRSLLPLeY---IKGKRATSDHISGAINYISHLE 120 6899***********************77...9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.433	67	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.69E-10	68	124	No hit	No description
Pfam	PF00010	7.7E-10	68	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	68	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-11	69	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0012	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MFPLQPNNDL PYLPPNHYPI PEDRIIHHDQ DLLSLCITDR NDENKGLDKS VLISFSRSHK 60 RDADCDPQKK MHRDIERQRR QEMSTLYASL RSLLPLEYIK GKRATSDHIS GAINYISHLE 120 RKIKGLESKR DELKSGNRSA RALSVRPSLD GVEIVIQSTN SSDQDHDFRL SKVLQLLLEE 180 GIGVANCLST RSSEMTFIHT IQSEVYHAGC LDIARLQLKL DEVLMDYRLS DIVFAY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F04119.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063759.1	1e-173	PREDICTED: transcription factor bHLH118
TrEMBL	A0A059BYH3	1e-172	A0A059BYH3_EUCGR; Uncharacterized protein
STRING	XP_010063759.1	1e-173	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F04119.1.p
Entrez Gene	104450768