PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04449.1.p
Common NameEUGRSUZ_F04449
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 224aa    MW: 25643.1 Da    PI: 8.3754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04449.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071645130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                      rg+W++ Ed +l+  ++++G ++W++ ++ 
  Eucgr.F04449.1.p 16 RGPWSPAEDARLISFIQKYGHENWRALPKQ 45
                      89***********************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-12747IPR009057Homeodomain-like
PROSITE profilePS5129411.6611172IPR017930Myb domain
SuperFamilySSF466894.38E-81156IPR009057Homeodomain-like
PfamPF002493.3E-61645IPR001005SANT/Myb domain
CDDcd001678.53E-51857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGKGRAPCCD KNKVKRGPWS PAEDARLISF IQKYGHENWR ALPKQAAPRP RIPLRLRSCP  60
VPRLRGMRRW TLNVRRVKVL WMRNLVVRKA WCPCLSPNEA EEVQEKSAKR MPDNKDSKDR  120
SSTFSGSNEP AHLKDSEEQM DSFFSFSSPY DARSALEPEE VNKPDTNSNG LGNFMIDIPF  180
ECDVEFWNML DSLEPFSVHK ADVGQDGLRP GERLPAEGED LSWL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04449.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065158.11e-77PREDICTED: uncharacterized protein LOC104452397
TrEMBLA0A059C0D41e-163A0A059C0D4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010065158.14e-77(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.17e-27myb domain protein 63