PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04475.5.p
Common NameEUGRSUZ_F04475, LOC104451042
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family G2-like
Protein Properties Length: 293aa    MW: 32371.2 Da    PI: 6.6029
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04475.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like331.3e-101233355
           G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                      +++m+vkgLtl+h+kSHLQk+Rl
  Eucgr.F04475.5.p  1 MRVMGVKGLTLYHLKSHLQKFRL 23
                      789*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-9124IPR009057Homeodomain-like
PfamPF143796.0E-2262101IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRVMGVKGLT LYHLKSHLQK FRLGKQPHKE FNDHSIKDAS ALELQRSSAS SSAMIGRSMN  60
EMQMEVQRRL HEQLEVQRHL QLRIEAQGKY MQAMLEKACQ TLAGESMVLH NSSGAGYHNH  120
KTPSNMPNPM NSIGGGAPFV KDFGSSSPLN FPSFQDLNIY GGADQLDLHP NLDRPSLSLD  180
SYHLPSNNNN SHDNSGFGKK RPSPFVTGGS GKNPLLWSAD DLPEHGHDQI HTPEMVDSIS  240
VDIYEAKPPP ALTGGGGGDE QKPLKPHRHD DHLFSRLDDA DDDDLYPSLI LW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04475.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064096.10.0PREDICTED: myb family transcription factor APL isoform X2
SwissprotQ9SAK53e-63APL_ARATH; Myb family transcription factor APL
TrEMBLA0A059BZ670.0A0A059BZ67_EUCGR; Uncharacterized protein
TrEMBLA0A059C0H30.0A0A059C0H3_EUCGR; Uncharacterized protein
STRINGXP_010064095.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.12e-58G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]