PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F04489.1.p
Common NameEUGRSUZ_F04489
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 480aa    MW: 52429.8 Da    PI: 8.4741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F04489.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-10160184226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C +++ t tCk+G +CkF H+
  Eucgr.F04489.1.p 160 GEKDCAHYMLTRTCKFGLNCKFDHP 184
                       7889********************8 PP
2zf-CCCH35.22.1e-11213237327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C+ff++t tCk+G rCkF+H++
  Eucgr.F04489.1.p 213 EPDCPFFLKTQTCKFGLRCKFNHPR 237
                       789********************96 PP
3zf-CCCH36.49e-12258282327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C f+++tG Ck+G++CkF+H++
  Eucgr.F04489.1.p 258 EPPCAFYLKTGNCKFGATCKFHHPK 282
                       589********************96 PP
4zf-CCCH38.81.5e-12336362127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+f+++tG CkyG++C+++H++
  Eucgr.F04489.1.p 336 PGEVDCPFYLKTGSCKYGATCRYNHPE 362
                       57899********************96 PP
5zf-CCCH40.93.4e-13420443326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       + +C+++++tG Ck+G+rCkF+H+
  Eucgr.F04489.1.p 420 QIECDYYMKTGVCKFGERCKFHHP 443
                       568********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.399158186IPR000571Zinc finger, CCCH-type
SMARTSM003560.012158185IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-8160184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854210238IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4210237IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-9213237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5215239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4216237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347255283IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5256282IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9258282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5258282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5260281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554335363IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7335362IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5339363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4341362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028417445IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6417444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7419446IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10421443IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-6423443IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MANHQLYGTA PPPGAAAKFN LAGLSTSPST NLLLRKRMEM GSDPDASFLA SSAFGGRSRS  60
QSSADALPYS PADVVGYSSY AGGLGARSSW SHSHLHLHPD DVSPLLSGTK RPSQALYHQN  120
VLDAQREIGQ SEAWYSTNLL SKRPRLESAS NLPIYPQRPG EKDCAHYMLT RTCKFGLNCK  180
FDHPIWVPEG GIPDWKEAPL VTTVESLPQR AGEPDCPFFL KTQTCKFGLR CKFNHPRDKI  240
IPSGTLDDTL NLPERLTEPP CAFYLKTGNC KFGATCKFHH PKDIKVAQVL QDTDAGELRD  300
SLAENDRMVR EVKLVKPLIS LSPASSHNTK GLPIRPGEVD CPFYLKTGSC KYGATCRYNH  360
PERNAIDLHV GIVPIVGASP ARNPNFAAGS AASIYQAVDP ILSQLMLGAG PTIYPQRPGQ  420
IECDYYMKTG VCKFGERCKF HHPIDRSAPT QAMANQSQQT VELTLAGLPR RKVCIECII*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F04489.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4540005e-61AM454000.1 Vitis vinifera contig VV78X082437.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064113.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X3
SwissprotQ941Q31e-146C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A059BZQ60.0A0A059BZQ6_EUCGR; Uncharacterized protein
STRINGXP_010064111.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-149floral homeotic protein (HUA1)