PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00392.1.p
Common NameEUGRSUZ_G00392, LOC104454905
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 277aa    MW: 30923.3 Da    PI: 4.6783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00392.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18153203255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+++Ae rdp++ g  +r++lg++ t+++Aa a+++a+ k++g
  Eucgr.G00392.1.p 153 SYRGVRRRP-WGKYAAEMRDPKKKG--ARIWLGTYETPQDAALAYDRAAFKMRG 203
                       6********.**********96643..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-22153212IPR016177DNA-binding domain
PfamPF008471.3E-13153203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-31153212IPR001471AP2/ERF domain
PROSITE profilePS5103223.485153211IPR001471AP2/ERF domain
SMARTSM003802.6E-38153217IPR001471AP2/ERF domain
PRINTSPR003671.6E-13154165IPR001471AP2/ERF domain
CDDcd000181.84E-29154213No hitNo description
PRINTSPR003671.6E-13193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLQEIVSPFE THQRDALRSI WEHLLGDDFD DGINATFYAP TPAHMYSRSS SFSDLLLAQS  60
WTQPPLEVDC SEDMLEYGAL RDALHSGWTM PSASNEELDF EVSTIGYNSI GLASNQELDF  120
EATTIDYNSI GVAMEEKPEV VEHEVQAPVE KTSYRGVRRR PWGKYAAEMR DPKKKGARIW  180
LGTYETPQDA ALAYDRAAFK MRGSKAKLNF PHLISSSDYE PIRVSTKRRS AEPSSPSSDD  240
GSTRTKRRKR EVDSDAEAEF GTSIPFPILD TGLLGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-29154218670ATERF1
3gcc_A7e-29154218670ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226248KRRSAEPSSPSSDDGSTRTKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00392.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068079.10.0PREDICTED: ethylene-responsive transcription factor 13
TrEMBLA0A059BAV20.0A0A059BAV2_EUCGR; Uncharacterized protein
STRINGXP_010068079.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-58ethylene-responsive element binding factor 13