PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00399.1.p
Common NameEUGRSUZ_G00399, LOC104452612
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 389aa    MW: 43748.3 Da    PI: 8.9129
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00399.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.11.4e-062422861761
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                       A+rsR RK+++i+eLe+ v++L+ e ++   e+e l++    l +
  Eucgr.G00399.1.p 242 AQRSRVRKLQYIAELERNVQALQVEGSEFSAEVEFLNQRHLILNM 286
                       89*************************999999999887665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-5226301No hitNo description
SMARTSM003380.0024231290IPR004827Basic-leucine zipper domain
CDDcd147032.87E-16233281No hitNo description
SuperFamilySSF579592.44E-5242284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSNSRPPSTR NLTYSGKHVF LPPKSPFPGL SPSYVDYIPN PPIGSKAVQR PGEGYTRHQR  60
TSSESFLMED QPSWLDDLLD EPETPVRRGG HRRSSSDSFA YIDVAKFSDP DHAAHDEHKY  120
RNVFSAPYWG TQEMDHQRGG QHAYFVADQN HVKQKNRVWE SSRNVATPPG APPVAGGDVA  180
TQNSALICVS QEVEKYPSMV NGKQDQVESV IDLKASSERK DASRAKPSST ETDTKRAKQQ  240
FAQRSRVRKL QYIAELERNV QALQVEGSEF SAEVEFLNQR HLILNMENNA LKQRLESLAQ  300
EQLIKCFEHE VLEREIGRLR AMYQQQQNQQ QNQQQQQQPS SGLQRSSSRS TSTSTSTSKG  360
LDAQFANLSL KHKDATSRHD TTSGPLRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00399.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065370.10.0PREDICTED: uncharacterized protein At4g06598
RefseqXP_010065371.10.0PREDICTED: uncharacterized protein At4g06598
RefseqXP_018733196.10.0PREDICTED: uncharacterized protein At4g06598
RefseqXP_018733197.10.0PREDICTED: uncharacterized protein At4g06598
SwissprotQ8W3M72e-68Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A059BAW30.0A0A059BAW3_EUCGR; Uncharacterized protein
STRINGXP_010065370.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.26e-88bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]