PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00890.1.p
Common NameEUGRSUZ_G00890
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 699aa    MW: 81136 Da    PI: 10.1536
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-1538129299
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       fk+   s +l+sg l +pk+f+++hg++      + l+ e g +W vkl  +k+ ++ ++l kGW++F +   +  g  +vF+++g+s f  +
  Eucgr.G00890.1.p  38 FKII-LSQTLESGKLGIPKRFLRRHGKD--LLGLVFLKVEGGLTWPVKL--EKSEDGmVWLWKGWRKFMEHYSIGFGHLLVFRYEGDSVF--R 123
                       4444.488899999***********977..555899999**********..66666669***************************9999..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v +f+k
  Eucgr.G00890.1.p 124 VIIFDK 129
                       999987 PP
2B3573.6e-18204292193
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ff v +++++ ++  l++p +f+++h +k++   +l+    s rsW+vkl+  +++++ +l++GW++Fv++ gL + D++vF+l++r++  ++
  Eucgr.G00890.1.p 204 FFRVVMRPSYIQKY-LCVPCEFFRKHVQKNK---QLVTLRYSDRSWQVKLRSYGHRRMAFLSTGWSSFVRETGLHVSDVCVFELIDRNDIMFR 292
                       56666777777765.9**********54433...355555699********9********************************998776444 PP
3B355.78.8e-18342435198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv +++++ +++ l++p  f+++h +k   +k++     s r W+vkl+   ++g+ +l++GW +Fv++ gL+ +D++vF+l++r++  + 
  Eucgr.G00890.1.p 342 FFKVVMRPSYVRKQ-LSIPSGFFRKHVQK---NKQIATLRYSDRLWQVKLRSFEHRGTAFLSNGWCSFVRETGLRLRDVCVFELIDRDDIVFS 430
                       78888888888886.***********544...23577777899*******9999*******************************99888788 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v +f+
  Eucgr.G00890.1.p 431 VYIFK 435
                       88886 PP
4B3634.8e-20457551199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv +++++ +++ l++p +f+++h +k+   k++   +   rsW+vkl+   ++g+ +lt+GW +F ++ gL+ gD++vF+l++r++  ++
  Eucgr.G00890.1.p 457 FFKVVMRPSYVRKR-LSIPSEFFRKHVKKN---KQVATLSYLDRSWQVKLKSYDHRGMAFLTSGWPSFTRETGLRLGDVCVFELIDRDDIVFR 545
                       78888888888775.***********6553...3577777788*******99999999***************************99999899 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v++f++
  Eucgr.G00890.1.p 546 VSIFSS 551
                       999975 PP
5B351.12.5e-166086881598
                       -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        l +p kf++++  g+    +++tl + sgrsWevkl   ++++    +l++GW+ Fv++ +L+ gD +vF+l++r++  +++++f+
  Eucgr.G00890.1.p 608 KLNIPWKFMKTYiRGD---RRMVTLVN-SGRSWEVKL--HGYKRFqiAFLAAGWSAFVREARLCIGDACVFELIDRDNIVFRISIFS 688
                       389*********7444...23566665.*********..555555559**************************9887767777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2331130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-2232130IPR015300DNA-binding pseudobarrel domain
CDDcd100175.79E-1635128No hitNo description
PROSITE profilePS5086312.95736130IPR003340B3 DNA binding domain
SMARTSM010192.6E-1537130IPR003340B3 DNA binding domain
PfamPF023624.8E-1338129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-24196298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-21200293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-14203297No hitNo description
PROSITE profilePS5086311.984203299IPR003340B3 DNA binding domain
PfamPF023621.4E-15204293IPR003340B3 DNA binding domain
SMARTSM010192.2E-14205297IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-21336437IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-24336437IPR015300DNA-binding pseudobarrel domain
CDDcd100177.29E-16341435No hitNo description
PROSITE profilePS5086312.323341437IPR003340B3 DNA binding domain
SMARTSM010193.3E-14342437IPR003340B3 DNA binding domain
PfamPF023621.3E-15342435IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-22451552IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-25451552IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.338456552IPR003340B3 DNA binding domain
CDDcd100178.54E-18456550No hitNo description
SMARTSM010193.1E-19457552IPR003340B3 DNA binding domain
PfamPF023628.6E-18457551IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-21587687IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-19589687IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-13594688No hitNo description
SMARTSM010196.4E-13596690IPR003340B3 DNA binding domain
PfamPF023623.6E-13602688IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928609690IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MARRRRHHRR GHRRRRVEDE GAEQEATPAT PPSCPHFFKI ILSQTLESGK LGIPKRFLRR  60
HGKDLLGLVF LKVEGGLTWP VKLEKSEDGM VWLWKGWRKF MEHYSIGFGH LLVFRYEGDS  120
VFRVIIFDKS ASEIDYPSSI GSYGPRPEGE FLSRKEEDVV EIEDSEGFAP RSRPRSKGLS  180
RGFGGRSSLT ALELASKFKS DHPFFRVVMR PSYIQKYLCV PCEFFRKHVQ KNKQLVTLRY  240
SDRSWQVKLR SYGHRRMAFL STGWSSFVRE TGLHVSDVCV FELIDRNDIM FRVSNFNNDG  300
WIEIGQSQCQ ESSSEPSFHG SPCLSPVTAH EKASGFESDH PFFKVVMRPS YVRKQLSIPS  360
GFFRKHVQKN KQIATLRYSD RLWQVKLRSF EHRGTAFLSN GWCSFVRETG LRLRDVCVFE  420
LIDRDDIVFS VYIFKSDGLS PVSAFEKARR LESDHPFFKV VMRPSYVRKR LSIPSEFFRK  480
HVKKNKQVAT LSYLDRSWQV KLKSYDHRGM AFLTSGWPSF TRETGLRLGD VCVFELIDRD  540
DIVFRVSIFS SDGRIEIEQS QFRESSSEPA FHGSPCPSPV ATYEKASKFE SEYPFFHVVI  600
LPNHIYTKLN IPWKFMKTYI RGDRRMVTLV NSGRSWEVKL HGYKRFQIAF LAAGWSAFVR  660
EARLCIGDAC VFELIDRDNI VFRISIFSGV NREVICID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1232743527141B3 domain-containing transcription factor VRN1
4i1k_B1e-1232743527141B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415RRHHRRGHRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00890.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065667.10.0PREDICTED: B3 domain-containing protein REM13 isoform X1
TrEMBLA0A059BBI70.0A0A059BBI7_EUCGR; Uncharacterized protein
STRINGXP_010065667.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-23B3 family protein